CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:11..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAW (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MW2) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAT (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAS (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MSSA476) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAR (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain MRSA252) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAN (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain N315) GN=copA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAM (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAE (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain Newman) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAC (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain COL) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAA9 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain JH9) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
[Close]
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAA8 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain NCTC 8325) GN=copA PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1 
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COPA_STAAW2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAT2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAS2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAR2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAN2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAM2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAE2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAAC2.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA92.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA82.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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