CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAA3 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain USA300) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAA2 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain JH1) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAA1 (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=copA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 2.141e-16
Identity = 46/87 (52.87%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAADI ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAADITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPB_MYCLE (Cation-transporting P-type ATPase B OS=Mycobacterium leprae GN=ctpB PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.652e-16
Identity = 45/87 (51.72%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  AD+G+A+G GTD+AI AAD++L++ +L  V  A+DL+R T   IR+N IWA GYN+  IPIA+  L       L P IAGAAMA
Sbjct:  648 LACADLGLAMGRGTDVAIGAADLILVRDSLGVVPVALDLARATMRTIRINMIWAFGYNVAAIPIASSGL-------LNPLIAGAAMA 727          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: SILP_SALTY (Putative cation-transporting P-type ATPase OS=Salmonella typhimurium GN=silP PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 45/87 (51.72%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L AADVG+A+G GTD+AIE+A + L+K +L  +  A  LS  T   IR N  +A  YN LG+P+AAG L+P  G  L P IA AAMA
Sbjct:  718 LAAADVGIAMGTGTDVAIESAGVTLLKGDLMILNRARHLSEITMKNIRQNLFFAFIYNALGVPVAAGLLYPVYGILLSPVIAAAAMA 804          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_SALTY (Copper-exporting P-type ATPase A OS=Salmonella typhimurium GN=copA PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G G+D+AIE A I LM+ +L  V  A+ +SR T   ++ N + A  YN +GIP+AAG L+P TG  L P +AGAAMA
Sbjct:  727 LAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMA 813          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_SALTI (Copper-exporting P-type ATPase A OS=Salmonella typhi GN=copA PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G G+D+AIE A I LM+ +L  V  A+ +SR T   ++ N + A  YN +GIP+AAG L+P TG  L P +AGAAMA
Sbjct:  727 LAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMA 813          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_ECOLI (Copper-exporting P-type ATPase A OS=Escherichia coli (strain K12) GN=copA PE=1 SV=4)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G G+D+AIE A I LM+ +L  V  A+ +SR T   ++ N + A  YN +GIP+AAG L+P TG  L P +AGAAMA
Sbjct:  728 LAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLHNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMA 814          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_ECO57 (Copper-exporting P-type ATPase A OS=Escherichia coli O157:H7 GN=copA PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.769e-16
Identity = 44/87 (50.57%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  ADVG+A+G G+D+AIE A I LM+ +L  V  A+ +SR T   ++ N + A  YN +GIP+AAG L+P TG  L P +AGAAMA
Sbjct:  728 LAQADVGIAMGGGSDVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPFTGTLLNPVVAGAAMA 814          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: AHM6_ARATH (Putative copper-transporting ATPase PAA1 OS=Arabidopsis thaliana GN=PAA1 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.229e-16
Identity = 40/86 (46.51%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  331 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAM 588
            L +++VG+A+G G   A E + +VLM + L  ++ A++LSR+T   ++ N  WA GYN++GIPIAAG L P TG  L P +AGA M
Sbjct:  816 LASSNVGVAMGGGAGAASEVSPVVLMGNRLTQLLDAMELSRQTMKTVKQNLWWAFGYNIVGIPIAAGVLLPLTGTMLTPSMAGALM 901          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COPA_STAA32.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA22.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
COPA_STAA12.141e-1652.87Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
CTPB_MYCLE3.652e-1651.72Cation-transporting P-type ATPase B OS=Mycobacteri... [more]
SILP_SALTY4.769e-1651.72Putative cation-transporting P-type ATPase OS=Salm... [more]
COPA_SALTY4.769e-1650.57Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
COPA_SALTI4.769e-1650.57Copper-exporting P-type ATPase A OS=Salmonella typ... [more]
COPA_ECOLI4.769e-1650.57Copper-exporting P-type ATPase A OS=Escherichia co... [more]
COPA_ECO574.769e-1650.57Copper-exporting P-type ATPase A OS=Escherichia co... [more]
AHM6_ARATH6.229e-1646.51Putative copper-transporting ATPase PAA1 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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