CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:11..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAAU (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus GN=copB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+GMAIGAGTD+AIE+ D++L+KSN  D+I  + LS+ T  ++  N  W  GYN++ +P+AAG L  + G  L P +    M+
Sbjct:  571 LIRADIGMAIGAGTDVAIESGDVILVKSNPSDIINFLSLSKNTMKKMVQNLWWGAGYNVIAVPLAAGIL-ASIGLILSPAVGAILMS 656          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAAR (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain MRSA252) GN=copB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.062e-15
Identity = 39/87 (44.83%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+GMAIGAGTD+AIE+ D++L+KSN  D+I  + LS+ T  ++  N  W  GYN++ +P+AAG L  + G  L P +    M+
Sbjct:  580 LIRADIGMAIGAGTDVAIESGDVILVKSNPSDIINFLSLSKNTMKKMVQNLWWGAGYNVIAVPLAAGIL-ASIGLILSPAVGAILMS 665          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_STAAB (Copper-exporting P-type ATPase A OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=copA PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.388e-15
Identity = 45/87 (51.72%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            LV AD+G+AIG GT++AIEAA I ++  +L  +  AI  S+ T   IR N  WA GYN+ GIPIAA  L       L PW+AGAAMA
Sbjct:  698 LVKADIGIAIGTGTEVAIEAAGITILGGDLMLIPKAIYASKATIRNIRQNLFWAFGYNIAGIPIAALGL-------LAPWVAGAAMA 777          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: CTPV_MYCTU (Probable cation-transporting ATPase V OS=Mycobacterium tuberculosis GN=ctpV PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.367e-15
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  331 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAA-GALFPTTGFRLPPWIAGAAM 588
            LV AD+G+AIG GTD+AIEA+DI LM   L+ V+ AI+LSR+T   I  N  WA GYN   IP+AA GAL P         +AGAAM
Sbjct:  668 LVQADLGIAIGTGTDVAIEASDITLMSGRLDGVVRAIELSRQTLRTIYQNLGWAFGYNTAAIPLAALGALNPV--------VAGAAM 746          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATSY_SYNP6 (Probable copper-transporting ATPase synA OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=synA PE=3 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  A VG+++ AG+DIA ++A ++L +  L+ V+ A +LS+     IR N  WALGYN++ +P+AAGA  P  G  L P IAGA MA
Sbjct:  677 LATAAVGISLAAGSDIAQDSAGLLLSRDRLDSVLVAWNLSQMGLRTIRQNLTWALGYNVVMLPLAAGAFLPAYGLALTPAIAGACMA 763          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATSY_SYNE7 (Probable copper-transporting ATPase synA OS=Synechococcus elongatus (strain PCC 7942) GN=synA PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.175e-14
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  A VG+++ AG+DIA ++A ++L +  L+ V+ A +LS+     IR N  WALGYN++ +P+AAGA  P  G  L P IAGA MA
Sbjct:  677 LATAAVGISLAAGSDIAQDSAGLLLSRDRLDSVLVAWNLSQMGLRTIRQNLTWALGYNVVMLPLAAGAFLPAYGLALTPAIAGACMA 763          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAHJ (Probable copper-transporting P-type ATPase B OS=Staphylococcus haemolyticus (strain JCSC1435) GN=copB PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 38/87 (43.68%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+G+AIGAGTD+A+++ DI+L+KSN  D+I  + LS  T  ++  N  W  GYN++ +P+AAGAL    G  L P +    M+
Sbjct:  573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGAL-AFIGLILSPAVGAILMS 658          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAES (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 12228) GN=copB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.004e-14
Identity = 37/87 (42.53%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+G+AIGAGTD+A+++ DI+L+KSN  D++  + LS  T  ++  N  W  GYN++ +P+AAGAL    G  L P +    M+
Sbjct:  573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIVHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGAL-AFVGLILSPAVGAILMS 658          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAEQ (Probable copper-transporting P-type ATPase B OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=copB PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+G+AIGAGTD+A+++ DI+L+KSN  D+I  + LS  T  ++  N  W  GYN++ +P+AAG L    G  L P I    M+
Sbjct:  573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGIL-AFIGLILSPAIGAILMS 658          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAAT (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=copB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+G+AIGAGTD+A+++ DI+L+KSN  D+I  + LS  T  ++  N  W  GYN++ +P+AAG L    G  L P I    M+
Sbjct:  573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGIL-AFIGLILSPAIGAILMS 658          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COPB_STAAU1.062e-1544.83Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAAR1.062e-1544.83Probable copper-transporting P-type ATPase B OS=St... [more]
COPA_STAAB1.388e-1551.72Copper-exporting P-type ATPase A OS=Staphylococcus... [more]
CTPV_MYCTU2.367e-1554.02Probable cation-transporting ATPase V OS=Mycobacte... [more]
ATSY_SYNP61.175e-1445.98Probable copper-transporting ATPase synA OS=Synech... [more]
ATSY_SYNE71.175e-1445.98Probable copper-transporting ATPase synA OS=Synech... [more]
COPB_STAHJ2.004e-1443.68Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAES2.004e-1442.53Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAEQ5.830e-1443.68Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_STAAT5.830e-1443.68Probable copper-transporting P-type ATPase B OS=St... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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