CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAA3 (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300) GN=copB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14
Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L+ AD+G+AIGAGTD+A+++ DI+L+KSN  D+I  + LS  T  ++  N  W  GYN++ +P+AAG L    G  L P I    M+
Sbjct:  573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGIL-AFIGLILSPAIGAILMS 658          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_ENTHR (Copper-exporting P-type ATPase B OS=Enterococcus hirae GN=copB PE=1 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13
Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588
            L  A +GMAIGAGTDIAI++AD+VL  S+ +D++  ++L+++T  ++  N  W  GYN++ IP+AAG L P  G  L P +    M+
Sbjct:  646 LARATIGMAIGAGTDIAIDSADVVLTNSDPKDILHFLELAKETRRKMIQNLWWGAGYNIIAIPLAAGILAP-IGLILSPAVGAVLMS 731          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_ENTHR (Probable copper-importing P-type ATPase A OS=Enterococcus hirae GN=copA PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13
Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = -1
Query:  328 ADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 579
            ADVG+A+G+GTDIA+E AD+ LM S+L  +   I LS  T  +I+ N  WA  YN +GIP AA       GF L P IAG AMA
Sbjct:  632 ADVGIAMGSGTDIAMETADVTLMNSHLTSINQMISLSAATLKKIKQNLFWAFIYNTIGIPFAA------FGF-LNPIIAGGAMA 708          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATU2_SCHPO (Copper-transporting ATPase ccc2 OS=Schizosaccharomyces pombe GN=ccc2 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = -1
Query:  262 LVAADVGMAIGAGTDIAIEAADIVLMKSN-LEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKL 588
            LV ADVG+A   G+ IA+E+AD++L++   L D   + DLSR    RI++N +WA  YN + IPIA G   P  G  L P  A AAM             L+ +K+PK L
Sbjct:  750 LVLADVGIAPINGSGIALESADVILVRKGVLLDTAVSFDLSRVIVKRIKMNLVWACIYNFVMIPIAMGFFLP-WGIYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSL 858          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATU1_YEAST (Probable copper-transporting ATPase OS=Saccharomyces cerevisiae GN=PCA1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11
Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = -1
Query:  340 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAG 588
            L  A +G+ I  G+++A  AAD+V++K  L +++T I +S+K   R++LN++W+  YNL  I +AAGA      F +PP  AG
Sbjct: 1115 LTQATIGVHINEGSEVAKLAADVVMLKPKLNNILTMITVSQKAMFRVKLNFLWSFTYNLFAILLAAGAF---VDFHIPPEYAG 1194          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588
            L  +DV + +  G+D++++AADIV   ++++ V +AI LS+ T   I+ N  WA  YN + IP+A G L+      L P IAG AM+            L+N+K
Sbjct:  639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANLMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_HELPJ (Copper-transporting ATPase OS=Helicobacter pylori J99 GN=copA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588
            L  +DV + +  G+D++++AADIV   ++++ V +AI LS+ T   I+ N  WA  YN + IP+A G L+      L P IAG AM+            L+N+K
Sbjct:  639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA2_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588
            L  +DV + +  G+D++++AADIV   ++++ V +AI LS+ T   I+ N  WA  YN + IP+A G L+      L P IAG AM+            L+N+K
Sbjct:  635 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 737          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA1_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11
Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1
Query:  277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588
            L  +DV + +  G+D++++AADIV   ++++ V +AI LS+ T   I+ N  WA  YN + IP+A G L+      L P IAG AM+            L+N+K
Sbjct:  639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
COPB_STAA35.830e-1443.68Probable copper-transporting P-type ATPase B OS=St... [more]
COPB_ENTHR1.299e-1343.68Copper-exporting P-type ATPase B OS=Enterococcus h... [more]
COPA_ENTHR3.779e-1351.19Probable copper-importing P-type ATPase A OS=Enter... [more]
ATU2_SCHPO4.178e-1240.91Copper-transporting ATPase ccc2 OS=Schizosaccharom... [more]
ATU1_YEAST1.588e-1139.76Probable copper-transporting ATPase OS=Saccharomyc... [more]
COPA_HELPY4.619e-1135.58Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA_HELPJ4.619e-1135.58Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA2_HELPY4.619e-1135.58Copper-transporting ATPase OS=Helicobacter pylori ... [more]
COPA1_HELPY4.619e-1135.58Copper-transporting ATPase OS=Helicobacter pylori ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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