CN188172
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_STAA3 (Probable copper-transporting P-type ATPase B OS=Staphylococcus aureus (strain USA300) GN=copB PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.830e-14 Identity = 38/87 (43.68%), Postives = 56/87 (64.37%), Query Frame = -1 Query: 328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588 L+ AD+G+AIGAGTD+A+++ DI+L+KSN D+I + LS T ++ N W GYN++ +P+AAG L G L P I M+ Sbjct: 573 LIRADIGIAIGAGTDVAVDSGDIILVKSNPSDIIHFLTLSNNTMRKMVQNLWWGAGYNIVAVPLAAGIL-AFIGLILSPAIGAILMS 658
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPB_ENTHR (Copper-exporting P-type ATPase B OS=Enterococcus hirae GN=copB PE=1 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 1.299e-13 Identity = 38/87 (43.68%), Postives = 58/87 (66.67%), Query Frame = -1 Query: 328 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 588 L A +GMAIGAGTDIAI++AD+VL S+ +D++ ++L+++T ++ N W GYN++ IP+AAG L P G L P + M+ Sbjct: 646 LARATIGMAIGAGTDIAIDSADVVLTNSDPKDILHFLELAKETRRKMIQNLWWGAGYNIIAIPLAAGILAP-IGLILSPAVGAVLMS 731
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_ENTHR (Probable copper-importing P-type ATPase A OS=Enterococcus hirae GN=copA PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 3.779e-13 Identity = 43/84 (51.19%), Postives = 53/84 (63.10%), Query Frame = -1 Query: 328 ADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMA 579 ADVG+A+G+GTDIA+E AD+ LM S+L + I LS T +I+ N WA YN +GIP AA GF L P IAG AMA Sbjct: 632 ADVGIAMGSGTDIAMETADVTLMNSHLTSINQMISLSAATLKKIKQNLFWAFIYNTIGIPFAA------FGF-LNPIIAGGAMA 708
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATU2_SCHPO (Copper-transporting ATPase ccc2 OS=Schizosaccharomyces pombe GN=ccc2 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 4.178e-12 Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = -1 Query: 262 LVAADVGMAIGAGTDIAIEAADIVLMKSN-LEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKL 588 LV ADVG+A G+ IA+E+AD++L++ L D + DLSR RI++N +WA YN + IPIA G P G L P A AAM L+ +K+PK L Sbjct: 750 LVLADVGIAPINGSGIALESADVILVRKGVLLDTAVSFDLSRVIVKRIKMNLVWACIYNFVMIPIAMGFFLP-WGIYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSL 858
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATU1_YEAST (Probable copper-transporting ATPase OS=Saccharomyces cerevisiae GN=PCA1 PE=2 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 1.588e-11 Identity = 33/83 (39.76%), Postives = 53/83 (63.86%), Query Frame = -1 Query: 340 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAG 588 L A +G+ I G+++A AAD+V++K L +++T I +S+K R++LN++W+ YNL I +AAGA F +PP AG Sbjct: 1115 LTQATIGVHINEGSEVAKLAADVVMLKPKLNNILTMITVSQKAMFRVKLNFLWSFTYNLFAILLAAGAF---VDFHIPPEYAG 1194
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 Query: 277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588 L +DV + + G+D++++AADIV ++++ V +AI LS+ T I+ N WA YN + IP+A G L+ L P IAG AM+ L+N+K Sbjct: 639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANLMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_HELPJ (Copper-transporting ATPase OS=Helicobacter pylori J99 GN=copA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 Query: 277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588 L +DV + + G+D++++AADIV ++++ V +AI LS+ T I+ N WA YN + IP+A G L+ L P IAG AM+ L+N+K Sbjct: 639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA2_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 Query: 277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588 L +DV + + G+D++++AADIV ++++ V +AI LS+ T I+ N WA YN + IP+A G L+ L P IAG AM+ L+N+K Sbjct: 635 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 737
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA1_HELPY (Copper-transporting ATPase OS=Helicobacter pylori GN=copA PE=3 SV=2) HSP 1 Score: 67.781 bits (164), Expect = 4.619e-11 Identity = 37/104 (35.58%), Postives = 58/104 (55.77%), Query Frame = -1 Query: 277 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYK 588 L +DV + + G+D++++AADIV ++++ V +AI LS+ T I+ N WA YN + IP+A G L+ L P IAG AM+ L+N+K Sbjct: 639 LAMSDVAVVMAKGSDVSVQAADIVSFNNDIKSVYSAIKLSQATIKNIKENLFWAFCYNSVFIPLACGVLY-KANIMLSPAIAGLAMSLSSVSVVLNSQRLRNFK 741 The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 69
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bpback to top |