CN188171

Overview
NameCN188171
Unique NameCN188171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 393
            +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + +K+      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + +  +E
Sbjct:  317 INFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19
Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LKD     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            +NFS+ + Q+IAQYY+F+RLG EGY  +       A  L + + K G +E +     D G+P V F LK+     +T++++SE LR  GW VPA+T+   A ++ V+R++ R  F     E L+   +  LK +   P
Sbjct:  315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFS----LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            LNFS+   QIIAQYY F+R G  GY  I + C      + + L+K G F+++    G +P V ++    L       ++++SE LR  GW V +Y++P++  +V V RVV+R  FSR L    +  ++  ++  +  P
Sbjct:  311 LNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448          
The following BLAST results are available for this feature:
BLAST of CN188171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCEC_LISMO2.655e-1934.85Probable glutamate decarboxylase gamma OS=Listeria... [more]
DCEB_SHIFL2.655e-1936.23Glutamate decarboxylase beta OS=Shigella flexneri ... [more]
DCEB_ECOLI2.655e-1936.23Glutamate decarboxylase beta OS=Escherichia coli (... [more]
DCEB_ECOL62.655e-1936.23Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEB_ECO572.655e-1936.23Glutamate decarboxylase beta OS=Escherichia coli O... [more]
DCEA_SHIFL2.655e-1936.23Glutamate decarboxylase alpha OS=Shigella flexneri... [more]
DCEA_ECOLI2.655e-1936.23Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECOL62.655e-1936.23Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
DCEA_ECO577.725e-1935.51Glutamate decarboxylase alpha OS=Escherichia coli ... [more]
GADB_DICDI1.364e-1533.33Glutamate decarboxylase B OS=Dictyostelium discoid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188171 ID=CN188171; Name=CN188171; organism=Citrus sinensis; type=EST; length=671bp
ATGCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATCA
GTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGCA
TGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTT
GAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAA
GGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGT
TTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGTG
GCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGA
AAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTC
CAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGAA
ACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGA
AGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCAT
GCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAAT
ATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGTG
TGTTTACTTTATGTGATTGTT
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