CN188171
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEC_LISMO (Probable glutamate decarboxylase gamma OS=Listeria monocytogenes GN=lmo2434 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 46/132 (34.85%), Postives = 77/132 (58.33%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 393 +NFS+ +SQII QYY F+R GFEGY+ I E A L + +EK+G FEI++ +P+V + +K+ T++++++ L GW VPAY +PA+ + + R V R D ++ E + + + +E Sbjct: 317 INFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTAIYLAKTVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADAIHNLE 448
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_SHIFL (Glutamate decarboxylase beta OS=Shigella flexneri GN=gadB PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECOLI (Glutamate decarboxylase beta OS=Escherichia coli (strain K12) GN=gadB PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECOL6 (Glutamate decarboxylase beta OS=Escherichia coli O6 GN=gadB PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_ECO57 (Glutamate decarboxylase beta OS=Escherichia coli O157:H7 GN=gadB PE=2 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_SHIFL (Glutamate decarboxylase alpha OS=Shigella flexneri GN=gadA PE=2 SV=2) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKQGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECOLI (Glutamate decarboxylase alpha OS=Escherichia coli (strain K12) GN=gadA PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECOL6 (Glutamate decarboxylase alpha OS=Escherichia coli O6 GN=gadA PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.655e-19 Identity = 50/138 (36.23%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LKD +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_ECO57 (Glutamate decarboxylase alpha OS=Escherichia coli O157:H7 GN=gadA PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19 Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSK---DVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 +NFS+ + Q+IAQYY+F+RLG EGY + A L + + K G +E + D G+P V F LK+ +T++++SE LR GW VPA+T+ A ++ V+R++ R F E L+ + LK + P Sbjct: 315 INFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKEGEDPGYTLYDLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLKYLSDHP 452
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: GADB_DICDI (Glutamate decarboxylase B OS=Dictyostelium discoideum GN=gadB PE=2 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.364e-15 Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = 1 Query: 4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFS----LKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402 LNFS+ QIIAQYY F+R G GY I + C + + L+K G F+++ G +P V ++ L ++++SE LR GW V +Y++P++ +V V RVV+R FSR L + ++ ++ + P Sbjct: 311 LNFSRPGGQIIAQYYNFLRHGRNGYTLIQDACAQQGIFIGKELKKMGIFDLIYDGTGALPGVCWTISKNLPSEPLFNLYDLSEKLRSRGWQVASYSLPSSMNDVVVSRVVIRHGFSRDLSSLFVKDVQNAIEYFQKHP 448 The following BLAST results are available for this feature:
BLAST of CN188171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 22
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188171 ID=CN188171; Name=CN188171; organism=Citrus sinensis; type=EST; length=671bpback to top |