CN188171

Overview
NameCN188171
Unique NameCN188171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1095..1765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: GADA_DICDI (Glutamate decarboxylase A OS=Dictyostelium discoideum GN=gadA PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.713e-13
Identity = 41/136 (30.15%), Postives = 73/136 (53.68%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVG-VPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLP 402
            LNFS+   QI+ QYY F+R G  GY  + + C+ +   + + ++K G F+I+    G +P   + LK  +     +F++S+ +R  GW + +YT+P N  ++ V RV++R  FS  +   LI      ++  +  P
Sbjct:  313 LNFSRPGGQIVCQYYNFLRHGRSGYTAVHQACLDHGIFISKQVKKHGIFDIVYDGTGALPGACWKLKKDAKVKFNLFDLSDRMRNRGWQIASYTLP-NLPDIVVQRVLIRHGFSHDMAMLLIEDFNRSIEYFDKHP 447          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE_YEAST (Glutamate decarboxylase OS=Saccharomyces cerevisiae GN=GAD1 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.661e-11
Identity = 63/226 (27.88%), Postives = 94/226 (41.59%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARA----LREGLEKTGRFEILS---------------KDV---------GVPLVAFSLKDSSAHTVFEISEG-----LRKFGWIVPAYTMPA---NAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI---------------ESLPSRVSTKTAHVIPMVNETQGDKPLKKSV---RETQEEVTRHWK 519
            LNFS+   Q++ QY+ F+ LG  GY+   +N +  ARA    L    +  G FEI+S               KD          GVPLVAF L         E+ +      LR  GWI+P Y +P     ++   VLRVV R +    L + LI  IE +L ++               E  P R S+    ++  +   Q D P    +    + +E  TR+++
Sbjct:  357 LNFSRPGFQVVHQYFNFVSLGHSGYRTQFQNSLFVARAFSFELLNSSKLPGCFEIVSSIHESIENDSAPKSVKDYWEHPQAYKPGVPLVAFKLSKKFHEEYPEVPQAILSSLLRGRGWIIPNYPLPKATDGSDEKEVLRVVFRSEMKLDLAQLLIVDIESILTKLIHSYEKVCHHIELASEQTPERKSSFIYEMLLALASPQDDIPTPDEIEKKNKLKETTTRNYR 582          
The following BLAST results are available for this feature:
BLAST of CN188171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
GADA_DICDI3.713e-1330.15Glutamate decarboxylase A OS=Dictyostelium discoid... [more]
DCE_YEAST2.661e-1127.88Glutamate decarboxylase OS=Saccharomyces cerevisia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188171 ID=CN188171; Name=CN188171; organism=Citrus sinensis; type=EST; length=671bp
ATGCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATCA
GTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGCA
TGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTT
GAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAA
GGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGT
TTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGTG
GCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGA
AAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTC
CAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGAA
ACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGA
AGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCAT
GCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAAT
ATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGTG
TGTTTACTTTATGTGATTGTT
back to top