CN188168

Overview
NameCN188168
Unique NameCN188168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:900..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXH_POPJC (Thioredoxin H-type OS=Populus jackii PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.147e-17
Identity = 37/100 (37.00%), Postives = 64/100 (64.00%), Query Frame = -1
Query:  182 GQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 481
            G V    T E W+++L +     K+++ +F+A WC PCK ++P   EL++  P+++FL +DVDEL   +  W ++A PTF   ++G+ ++++VGA K EL
Sbjct:   24 GNVHLITTKERWDQKLSEASRDGKIVLANFSARWCGPCKQIAPYYIELSENYPSLMFLVIDVDELSDFSASWEIKATPTFFFLRDGQQVDKLVGANKPEL 123          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_CHLTR (Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 5.368e-17
Identity = 41/87 (47.13%), Postives = 59/87 (67.82%), Query Frame = -1
Query:  161 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 418
            A  L+++DF A WC PCK+++P+L  LA +LP V  LKVD+D     AE+++V ++PT +L K+GK +ER VG K KD L   + KH
Sbjct:   15 ASGLVLIDFFAEWCGPCKMLTPVLEALAAELPHVTILKVDIDSSPRPAEQYSVSSIPTLILFKDGKEVERSVGLKDKDSLIKLISKH 101          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO1_CAEEL (Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.196e-16
Identity = 37/89 (41.57%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  149 KKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHATVE 415
            +K+I++DF A+WC PCK ++P+  ELA     +IF KVDVDE + +  ++ V+ MPTF+ TK G  +E + G  +DEL+  V +H + +
Sbjct:   27 EKIIILDFYATWCGPCKAIAPLYKELATTHKGIIFCKVDVDEAEDLCSKYDVKMMPTFIFTKNGDAIEALEGCVEDELRQKVLEHVSAQ 115          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_CHLMU (Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.562e-16
Identity = 41/87 (47.13%), Postives = 58/87 (66.67%), Query Frame = -1
Query:  161 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 418
            A  L++VDF A WC PCK+++P+L  LA +LP V  LK+D+D     AE++ V ++PT +L K+GK +ER VG K KD L   + KH
Sbjct:   15 ASGLVLVDFFAEWCGPCKMLTPVLEALAAELPYVTILKLDIDASPRPAEQFGVSSIPTLILFKDGKEVERSVGLKDKDSLVKLISKH 101          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRX1_YEAST (Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 PE=1 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 39/94 (41.49%), Postives = 62/94 (65.96%), Query Frame = -1
Query:  158 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 439
            +    IA  KL+VVDF A+WC PCK+++P++ + +++ P   F K+DVDEL  VA++  V AMPT +L K GK + ++VGA    ++ A+  +A
Sbjct:   10 EFDSAIAQDKLVVVDFYATWCGPCKMIAPMIEKFSEQYPQADFYKLDVDELGDVAQKNEVSAMPTLLLFKNGKEVAKVVGANPAAIKQAIAANA 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_HORSE (Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3)

HSP 1 Score: 85.5001 bits (210), Expect = 2.040e-16
Identity = 37/85 (43.53%), Postives = 59/85 (69.41%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ ++   GA K++L+  ++
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIK 102          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_SHEEP (Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 3.480e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  164 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 421
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVSEFSGANKEKLEATINE 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_PIG (Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 37/86 (43.02%), Postives = 58/86 (67.44%), Query Frame = -1
Query:  164 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 421
            A +KL+VVDF+A+WC PCK++ P    L++K   V+FL+VDVD+ + VA E  V+ MPTF   K+G+ +    GA K++L+  + +
Sbjct:   18 AGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVASECEVKCMPTFQFFKKGQKVGEFSGANKEKLEATINE 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_OPHHA (Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 36/87 (41.38%), Postives = 57/87 (65.52%), Query Frame = -1
Query:  161 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 421
            A  KLIVVDF+A+WC PCK++ P    + +K P V+F+++DVD+ + VA    V+ MPTF   K  + +    GA K++L+ A++K+
Sbjct:   18 AGSKLIVVDFSATWCGPCKMIKPFFHSMVEKYPDVVFIEIDVDDAQDVASHCDVKCMPTFQFYKNNEKVHEFSGANKEKLEEAIKKY 104          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_MOUSE (Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3)

HSP 1 Score: 84.3445 bits (207), Expect = 4.545e-16
Identity = 40/97 (41.24%), Postives = 63/97 (64.95%), Query Frame = -1
Query:  158 EQLQKGIAAK--KLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHA 442
            E  Q+ +AA   KL+VVDF+A+WC PCK++ P    L  K   V+FL+VDVD+ + VA +  V+ MPTF   K+G+ +    GA K++L+ ++ ++A
Sbjct:    9 EAFQEALAAAGDKLVVVDFSATWCGPCKMIKPFFHSLCDKYSNVVFLEVDVDDCQDVAADCEVKCMPTFQFYKKGQKVGEFSGANKEKLEASITEYA 105          
The following BLAST results are available for this feature:
BLAST of CN188168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
TRXH_POPJC3.147e-1737.00Thioredoxin H-type OS=Populus jackii PE=1 SV=1[more]
THIO_CHLTR5.368e-1747.13Thioredoxin OS=Chlamydia trachomatis GN=trxA PE=3 ... [more]
THIO1_CAEEL1.196e-1641.57Thioredoxin-1 OS=Caenorhabditis elegans GN=trx-1 P... [more]
THIO_CHLMU1.562e-1647.13Thioredoxin OS=Chlamydia muridarum GN=trxA PE=3 SV... [more]
TRX1_YEAST2.040e-1641.49Thioredoxin-1 OS=Saccharomyces cerevisiae GN=TRX1 ... [more]
THIO_HORSE2.040e-1643.53Thioredoxin OS=Equus caballus GN=TXN PE=3 SV=3[more]
THIO_SHEEP3.480e-1643.02Thioredoxin OS=Ovis aries GN=TXN PE=3 SV=2[more]
THIO_PIG4.545e-1643.02Thioredoxin OS=Sus scrofa GN=TXN PE=1 SV=3[more]
THIO_OPHHA4.545e-1641.38Thioredoxin OS=Ophiophagus hannah GN=TXN PE=3 SV=3[more]
THIO_MOUSE4.545e-1641.24Thioredoxin OS=Mus musculus GN=Txn PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188168 ID=CN188168; Name=CN188168; organism=Citrus sinensis; type=EST; length=577bp
CTTTGGAGAGATGNCATTTATTCATATATACAGGCCTGTTAAACATGGTA
CCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAAAAGAC
CAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCT
CAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCT
CCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGG
CATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCAACAT
CCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAAA
ATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCAC
CACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGG
ATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATT
ATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTT
CTGTGTTTGGTGACGGAACTCTTGCCT
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