CN188168

Overview
NameCN188168
Unique NameCN188168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO2_DROME (Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 4.254e-14
Identity = 42/96 (43.75%), Postives = 59/96 (61.46%), Query Frame = -1
Query:  179 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 463
            H     + QL K  A+ KL+V+DF A+WC PCK++SP L EL+ +    V+ LKVDVDE + +A E+ + +MPTFV  K G  +E   GA    L+
Sbjct:   14 HLQADLDGQLTK--ASGKLVVLDFFATWCGPCKMISPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISSMPTFVFLKNGVKVEEFAGANAKRLE 107          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_FUSCU (Thioredoxin-like protein OS=Fusarium culmorum PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = -1
Query:  164 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVL-----ERIVGAKKDELQLAVEK 445
            N++LQK +++   +VVDF A WCPPCK ++P+  +L+ K  +P V+ F KV+VD ++  A+++ + AMPTF+  KEGK +       I GA    L  A EK
Sbjct:    8 NDELQKLLSSTTYVVVDFFADWCPPCKAIAPVYEQLSTKHSVPDVLAFAKVNVDHVQDAAQQYGITAMPTFMFFKEGKQVAVNGQAVIKGADPRTLGAAAEK 109          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX3_HUMAN (Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 5.556e-14
Identity = 34/90 (37.78%), Postives = 60/90 (66.67%), Query Frame = -1
Query:  155 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 424
            + AK L+VV F A W P C  M+ +++ELAK+LP V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++HA+
Sbjct:   28 LKAKSLLVVHFWAPWAPQCAQMNEVMAELAKELPQVSFVKLEAEGVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 117          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_EMENI (Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 9.476e-14
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = -1
Query:  167 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 457
            + S  E  +K + AK  +VVD  A+WC PCK ++P + + A+      F ++DVDEL  VA E  + AMPTF+L K+G+ +  +VGA    L+  ++
Sbjct:   10 ITSKAEFQEKVLNAKGFVVVDCFATWCGPCKAIAPTVEKFAQTYTDASFYQIDVDELSEVAAELGIRAMPTFLLFKDGQKVSDVVGANPGALEAGIK 106          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXF_PEA (Thioredoxin F-type, chloroplastic OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.616e-13
Identity = 33/86 (38.37%), Postives = 59/86 (68.60%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A  K +V+D    WC PCK+++P+  EL++K   V+FLK+D + + KS+A+E  ++ +PTF + K+ K+++ + GAK D+L  A++
Sbjct:   92 AGDKTVVLDMFTKWCGPCKVIAPLYEELSQKYLDVVFLKLDCNQDNKSLAKELGIKVVPTFKILKDNKIVKEVTGAKFDDLVAAID 177          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX3_XENTR (Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.111e-13
Identity = 34/89 (38.20%), Postives = 59/89 (66.29%), Query Frame = -1
Query:  155 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 421
            +AK L VV F A W P C  M+ +++ELAK+ P V+F+K++ + +  V+E++ V ++PTF+  K  + ++R+ GA   EL   V++HA+
Sbjct:   20 SAKSLTVVHFWAPWAPQCTQMNEVMAELAKEQPQVMFVKLEAEAVPEVSEKYEVTSVPTFLFFKNSQKIDRLDGAHAPELTKRVQRHAS 108          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_ICTPU (Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 36/89 (40.45%), Postives = 52/89 (58.43%), Query Frame = -1
Query:  161 AAKKLIVVDFTASWCPPCKLMSPILSELAKK--LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 421
            A  KL+VVDFTA+WC PC+ + PI   L+K      V+FLKVDVD+   V+    ++ MPTF   K G+ ++   GA +  L+  +  H
Sbjct:   18 AGDKLVVVDFTATWCGPCQKIGPIFETLSKSEDYQNVVFLKVDVDDAADVSSHCDIKCMPTFHFYKNGQKIDEFSGANEQTLKQKINDH 106          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX5_SCHPO (Monothiol glutaredoxin-5 OS=Schizosaccharomyces pombe GN=grx5 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.703e-13
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = -1
Query:  161 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 457
            VE + E LQ G   +++I+++F A W  PCK M+ +  + AK     +FLK++ ++   +AE + V A+P FVL    KVL RI GA   +L+ A++++
Sbjct:    8 VEQFQEILQNG--KEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDIAESFDVNAVPLFVLIHGAKVLARISGANPQKLKAAIDEY 104          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRX2_SCHPO (Thioredoxin-2, mitochondrial OS=Schizosaccharomyces pombe GN=trx2 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.142e-13
Identity = 38/101 (37.62%), Postives = 62/101 (61.39%), Query Frame = -1
Query:  161 HTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 463
            + VES+ +   + I+A K+ VVDF A WC PCK + P L +L+++     F+ V+ D+   +A++  V A+PT VL ++G+ L+RIVGA    L   + K+
Sbjct:   20 NAVESFGDYNTR-ISADKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKY 119          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXF1_ARATH (Thioredoxin F-type 1, chloroplastic OS=Arabidopsis thaliana GN=At3g02730 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 33/86 (38.37%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A +KL+V+D    WC PCK+++P    L++K   V+FLK+D + + + +A+E  +  +PTF + K+ KV++ + GAK D+L  A+E
Sbjct:   85 AGEKLVVLDMYTQWCGPCKVIAPKYKALSEKYDDVVFLKLDCNPDNRPLAKELGIRVVPTFKILKDNKVVKEVTGAKYDDLVAAIE 170          
The following BLAST results are available for this feature:
BLAST of CN188168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO2_DROME4.254e-1443.75Thioredoxin-2 OS=Drosophila melanogaster GN=Trx-2 ... [more]
THIO_FUSCU5.556e-1441.18Thioredoxin-like protein OS=Fusarium culmorum PE=1... [more]
GLRX3_HUMAN5.556e-1437.78Glutaredoxin-3 OS=Homo sapiens GN=GLRX3 PE=1 SV=2[more]
THIO_EMENI9.476e-1438.14Thioredoxin OS=Emericella nidulans GN=TRX1 PE=1 SV... [more]
TRXF_PEA1.616e-1338.37Thioredoxin F-type, chloroplastic OS=Pisum sativum... [more]
GLRX3_XENTR2.111e-1338.20Glutaredoxin-3 OS=Xenopus tropicalis GN=glrx3 PE=2... [more]
THIO_ICTPU4.703e-1340.45Thioredoxin OS=Ictalurus punctatus GN=txn PE=3 SV=... [more]
GLRX5_SCHPO4.703e-1336.36Monothiol glutaredoxin-5 OS=Schizosaccharomyces po... [more]
TRX2_SCHPO6.142e-1337.62Thioredoxin-2, mitochondrial OS=Schizosaccharomyce... [more]
TRXF1_ARATH8.022e-1338.37Thioredoxin F-type 1, chloroplastic OS=Arabidopsis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188168 ID=CN188168; Name=CN188168; organism=Citrus sinensis; type=EST; length=577bp
CTTTGGAGAGATGNCATTTATTCATATATACAGGCCTGTTAAACATGGTA
CCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAAAAGAC
CAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCT
CAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCT
CCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGG
CATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCAACAT
CCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAAA
ATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCAC
CACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGG
ATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATT
ATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTT
CTGTGTTTGGTGACGGAACTCTTGCCT
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