CN188168

Overview
NameCN188168
Unique NameCN188168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:900..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_CYACA (Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 8.022e-13
Identity = 33/90 (36.67%), Postives = 64/90 (71.11%), Query Frame = -1
Query:  161 IAAKKLIVVDFTASWCPPCKLMSPILSELAKK-LPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 424
            + ++KL++VDF A WC PC+++SP++ ELA++ +  V  +K++ DE  S++ E+ + ++PT +L K+GK ++ ++GA  K  L  A++K+
Sbjct:   17 VNSEKLVLVDFWAPWCGPCRMISPVIDELAQEYVEQVKIVKINTDENPSISAEYGIRSIPTLMLFKDGKRVDTVIGAVPKSTLTNALKKY 106          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXF2_ARATH (Thioredoxin F-type 2, chloroplastic OS=Arabidopsis thaliana GN=At5g16400 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A  K++V+D    WC PCK+++P   EL++K   ++FLK+D + + K +A+E  +  +PTF + K+ KV++ + GAK ++L  A+E
Sbjct:   95 AGDKIVVLDMYTQWCGPCKVIAPKYKELSEKYQDMVFLKLDCNQDNKPLAKELGIRVVPTFKILKDNKVVKEVTGAKYEDLLAAIE 180          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_PENCH (Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.368e-12
Identity = 40/97 (41.24%), Postives = 55/97 (56.70%), Query Frame = -1
Query:  167 VESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 457
            ++S  E  +K   A   +VVDF A+WC PCK ++P L +L++    + F KVDVDEL  VA    V AMPTF   K G+  E + GA    +Q  V+
Sbjct:    6 IKSVAEYKEKVTDATGPVVVDFHATWCGPCKAIAPALEKLSETHTGIQFYKVDVDELSEVAASNGVSAMPTFHFYKGGERNEEVKGANPAAIQAGVK 102          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXF_BRANA (Thioredoxin F-type, chloroplastic OS=Brassica napus GN=TRXF PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 32/86 (37.21%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A +K++V+D    WC PCK+++P    L++K   V+FLK+D + E + +A+E  +  +PTF + K+ +V++ + GAK D+L  A+E
Sbjct:   88 AGEKIVVLDMYTQWCGPCKVIAPKYKALSEKYEDVVFLKLDCNPENRPLAKELGIRVVPTFKILKDNQVVKEVTGAKYDDLVAAIE 173          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_MYCGA (Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE=3 SV=2)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 31/88 (35.23%), Postives = 58/88 (65.91%), Query Frame = -1
Query:  179 QLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVG-AKKDELQ 439
            +L + ++  K +VVDF A+WC PCK++ PI  E+A+      F+KVDVD+   ++ E+ + ++PT +  ++GK+ ++ +G   K+EL+
Sbjct:    9 ELDQLLSTNKKVVVDFYANWCGPCKILGPIFEEVAQDKKDWTFVKVDVDQANEISSEYEIRSIPTVIFFQDGKMADKRIGFIPKNELK 96          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX3_MOUSE (Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.787e-12
Identity = 37/116 (31.90%), Postives = 69/116 (59.48%), Query Frame = -1
Query:  155 AEEGQ----VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 490
            AE G+    V+   + + + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H +
Sbjct:    6 AEAGEAAVAVVEVGSAQQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVS 119          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TXL1_SCHPO (Thioredoxin-like protein 1 OS=Schizosaccharomyces pombe GN=txl1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 38/101 (37.62%), Postives = 55/101 (54.46%), Query Frame = -1
Query:  179 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKL--PAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQ 475
            VI   + + W   + K       + VD  A WC PCK +SP+ S+LA K   P  +F KV+VDE + +A    V+AMPTFV  + GK ++ + GA    L+
Sbjct:    3 VIEIRSYQHWISTIPKS----GYLAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFENGKQIDMLTGANPQALK 99          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX3_BOVIN (Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.334e-12
Identity = 32/90 (35.56%), Postives = 58/90 (64.44%), Query Frame = -1
Query:  155 IAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 424
            + AK L+VV F A W P C  M+ +++ELAK+   V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++HA+
Sbjct:   27 LRAKSLLVVHFWAPWAPQCAQMNDVMAELAKEHQQVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKIDRLDGAHAPELTKKVQRHAS 116          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAS1 (Thioredoxin OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=trxA PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  161 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 460
            T  ++++ +Q G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   +EKH
Sbjct:    7 TDSNFDDNIQSGVN-----LVDFWATWCGPCKMIAPVLEELAGDYDGKANILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVIEKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_BACSU (Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 37/102 (36.27%), Postives = 66/102 (64.71%), Query Frame = -1
Query:  161 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVI-FLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 460
            T +S++ +  +G+     ++ DF A WC PCK+++P+L EL +++   +  +K+DVDE +  A ++ V ++PT ++ K+G+V+E  VG K K+ LQ  V KH
Sbjct:    7 TDQSFSAETSEGV-----VLADFWAPWCGPCKMIAPVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMSIPTLLVLKDGEVVETSVGFKPKEALQELVNKH 103          
The following BLAST results are available for this feature:
BLAST of CN188168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_CYACA8.022e-1336.67Thioredoxin OS=Cyanidium caldarium GN=trxA PE=3 SV... [more]
TRXF2_ARATH1.368e-1237.21Thioredoxin F-type 2, chloroplastic OS=Arabidopsis... [more]
THIO_PENCH1.368e-1241.24Thioredoxin OS=Penicillium chrysogenum GN=TRXA PE=... [more]
TRXF_BRANA1.787e-1237.21Thioredoxin F-type, chloroplastic OS=Brassica napu... [more]
THIO_MYCGA1.787e-1235.23Thioredoxin OS=Mycoplasma gallisepticum GN=trxA PE... [more]
GLRX3_MOUSE1.787e-1231.90Glutaredoxin-3 OS=Mus musculus GN=Glrx3 PE=1 SV=1[more]
TXL1_SCHPO2.334e-1237.62Thioredoxin-like protein 1 OS=Schizosaccharomyces ... [more]
GLRX3_BOVIN2.334e-1235.56Glutaredoxin-3 OS=Bos taurus GN=GLRX3 PE=2 SV=1[more]
THIO_STAS13.981e-1236.27Thioredoxin OS=Staphylococcus saprophyticus subsp.... [more]
THIO_BACSU3.981e-1236.27Thioredoxin OS=Bacillus subtilis GN=trxA PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188168 ID=CN188168; Name=CN188168; organism=Citrus sinensis; type=EST; length=577bp
CTTTGGAGAGATGNCATTTATTCATATATACAGGCCTGTTAAACATGGTA
CCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAAAAGAC
CAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCT
CAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCT
CCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGG
CATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCAACAT
CCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAAA
ATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCAC
CACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGG
ATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATT
ATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTT
CTGTGTTTGGTGACGGAACTCTTGCCT
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