CN188168

Overview
NameCN188168
Unique NameCN188168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:900..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: GLRX3_RAT (Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.981e-12
Identity = 34/107 (31.78%), Postives = 64/107 (59.81%), Query Frame = -1
Query:  155 VISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKHAT 475
            V+   +   + E L+  +  K L+VV F A W P C  M+ +++ELAK+ P V F+K++ + +  V+E++ + ++PTF+  K  + ++R+ GA   EL   V++H +
Sbjct:   15 VVEVGSARQFEELLR--LKTKSLLVVHFWAPWAPQCVQMNDVMAELAKEHPHVSFVKLEAEAVPEVSEKYEISSVPTFLFFKNSQKVDRLDGAHAPELTKKVQRHVS 119          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAHJ (Thioredoxin OS=Staphylococcus haemolyticus (strain JCSC1435) GN=trxA PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.200e-12
Identity = 37/102 (36.27%), Postives = 65/102 (63.73%), Query Frame = -1
Query:  161 TVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 460
            T  +++E +Q G+      +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:    7 TDSNFDENIQSGVK-----LVDFWATWCGPCKMIAPVLEELAGDYDGKADILKLDVDENPSTAAKFEVMSIPTLIVFKDGEPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEBR (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis briggsae GN=png-1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 6.791e-12
Identity = 32/95 (33.68%), Postives = 56/95 (58.95%), Query Frame = -1
Query:  161 NEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 445
            NE L+K   + +LI+VDF A+WC PC+++SP    L+ +     FLKV+ D  + +   +++ AMPTF+  K  + ++ + GA +  +   + KH
Sbjct:   13 NEILEKS-DSNRLIIVDFFANWCGPCRMISPAFERLSMEFGNATFLKVNTDLARDIVMRYSISAMPTFLFFKNKQQVDSVRGANESAIISTIRKH 106          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TXND2_HUMAN (Thioredoxin domain-containing protein 2 OS=Homo sapiens GN=TXNDC2 PE=1 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 30/84 (35.71%), Postives = 52/84 (61.90%), Query Frame = -1
Query:  170 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAV 421
            A ++L+ VDF+A+WC PC+ + P    L+ K   V+FL+VD D  + V  E A+  +PTF   K+ + ++ + GA K++L+  +
Sbjct:  466 AGERLVAVDFSATWCGPCRTIRPFFHALSVKHEDVVFLEVDADNCEEVVRECAIMCVPTFQFYKKEEKVDELCGALKEKLEAVI 549          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: NGLY1_CAEEL (Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase OS=Caenorhabditis elegans GN=F56G4.5 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.869e-12
Identity = 27/86 (31.40%), Postives = 52/86 (60.47%), Query Frame = -1
Query:  161 AKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEKH 418
            A +LI++DF A+WC PC+++SPI  + + +     FLKV+ D  + + + + + AMPTF+  K  + ++ + GA +  +   + +H
Sbjct:   21 ANRLIIIDFFANWCGPCRMISPIFEQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFLKNRQQVDMVRGANQQAIAEKIRQH 106          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXF_SPIOL (Thioredoxin F-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 35/86 (40.70%), Postives = 54/86 (62.79%), Query Frame = -1
Query:  167 AAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVD-ELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVE 421
            A  K +V+D    WC PCK M+P   +LA++   VIFLK+D + E K++A+E  +  +PTF + KE  V+  + GAK D+L  A++
Sbjct:  100 AGDKPVVLDMFTQWCGPCKAMAPKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRVVPTFKILKENSVVGEVTGAKYDKLLEAIQ 185          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO1_DROME (Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.158e-11
Identity = 35/97 (36.08%), Postives = 59/97 (60.82%), Query Frame = -1
Query:  182 SCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDEL 469
            S  T+  ++++++   A  KLIV+DF A+WC PCK M   +  LA+K  +  + LK+DVD+ + + E + V +MPTFV  ++ + L    GA + +L
Sbjct:    3 SVRTMNDYHKRIEA--ADDKLIVLDFYATWCGPCKEMESTVKSLARKYSSKAVVLKIDVDKFEELTERYKVRSMPTFVFLRQNRRLASFAGADEHKL 97          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TXND2_MOUSE (Thioredoxin domain-containing protein 2 OS=Mus musculus GN=Txndc2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 36/112 (32.14%), Postives = 63/112 (56.25%), Query Frame = -1
Query:  164 IKMAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAKKDELQLAVEK 499
            I+  EEG V      E + E L+   A +KL+ VDF+A+WC PC++M P+   L+ K   VIFL+VD ++ + + ++  +  +PTF   K  + +    GA   +L+ ++ +
Sbjct:  404 IETLEEGLVRVIKDKEEFEEVLKD--AGEKLVAVDFSAAWCGPCRMMKPLFHSLSLKHEDVIFLEVDTEDCEQLVQDCEIFHLPTFQFYKNEEKVGEFSGALVGKLERSISE 513          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_MYCTU (Thioredoxin OS=Mycobacterium tuberculosis GN=trxA PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  194 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 424
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_MYCBO (Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 2.581e-11
Identity = 31/78 (39.74%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  194 IAAKKLIVVDFTASWCPPCKLMSPILSELA-KKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK 424
            +++ K ++VDF A+WC PCK+++P+L E+A ++   +   K+DVD     A  + V ++PT +L K+G+ ++RIVGAK
Sbjct:   22 LSSNKPVLVDFWATWCGPCKMVAPVLEEIATERATDLTVAKLDVDTNPETARNFQVVSIPTLILFKDGQPVKRIVGAK 99          
The following BLAST results are available for this feature:
BLAST of CN188168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
GLRX3_RAT3.981e-1231.78Glutaredoxin-3 OS=Rattus norvegicus GN=Glrx3 PE=1 ... [more]
THIO_STAHJ5.200e-1236.27Thioredoxin OS=Staphylococcus haemolyticus (strain... [more]
NGLY1_CAEBR6.791e-1233.68Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TXND2_HUMAN8.869e-1235.71Thioredoxin domain-containing protein 2 OS=Homo sa... [more]
NGLY1_CAEEL8.869e-1231.40Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagin... [more]
TRXF_SPIOL1.158e-1140.70Thioredoxin F-type, chloroplastic OS=Spinacia oler... [more]
THIO1_DROME1.158e-1136.08Thioredoxin-1 OS=Drosophila melanogaster GN=dhd PE... [more]
TXND2_MOUSE2.581e-1132.14Thioredoxin domain-containing protein 2 OS=Mus mus... [more]
THIO_MYCTU2.581e-1139.74Thioredoxin OS=Mycobacterium tuberculosis GN=trxA ... [more]
THIO_MYCBO2.581e-1139.74Thioredoxin OS=Mycobacterium bovis GN=trxA PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188168 ID=CN188168; Name=CN188168; organism=Citrus sinensis; type=EST; length=577bp
CTTTGGAGAGATGNCATTTATTCATATATACAGGCCTGTTAAACATGGTA
CCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAAAAGAC
CAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCT
CAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCT
CCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGG
CATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCAACAT
CCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAAA
ATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCAC
CACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGG
ATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATT
ATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTT
CTGTGTTTGGTGACGGAACTCTTGCCT
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