CN188168

Overview
NameCN188168
Unique NameCN188168
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length577
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:900..1479. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAAR (Thioredoxin OS=Staphylococcus aureus (strain MRSA252) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAAN (Thioredoxin OS=Staphylococcus aureus (strain N315) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAAM (Thioredoxin OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=trxA PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAAC (Thioredoxin OS=Staphylococcus aureus (strain COL) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAAB (Thioredoxin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAA8 (Thioredoxin OS=Staphylococcus aureus (strain NCTC 8325) GN=trxA PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_STAA3 (Thioredoxin OS=Staphylococcus aureus (strain USA300) GN=trxA PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 33/83 (39.76%), Postives = 56/83 (67.47%), Query Frame = -1
Query:  161 VVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEKH 403
            +VDF A+WC PCK+++P+L ELA         LK+DVDE  S A ++ V ++PT ++ K+G+ ++++VG + K+ L   ++KH
Sbjct:   21 LVDFWATWCGPCKMIAPVLEELAADYEGKADILKLDVDENPSTAAKYEVMSIPTLIVFKDGQPVDKVVGFQPKENLAEVLDKH 103          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIOM_BOVIN (Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 3.370e-11
Identity = 34/83 (40.96%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  164 IVVDFTASWCPPCKLMSPILSEL-AKKLPAVIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGAK-KDELQLAVEK 406
            +VVDF A WC PCK++ P L ++ AK+   V+  KVD+D+   +A E+ V A+PT +  K G V+++ VG K +D+L+  ++K
Sbjct:   81 VVVDFHAQWCGPCKILGPRLEKVVAKQHGKVVMAKVDIDDHTDLALEYEVSAVPTVLAMKNGDVVDKFVGIKDEDQLEAFLKK 163          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: TRXM_SPIOL (Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 37/117 (31.62%), Postives = 68/117 (58.12%), Query Frame = -1
Query:  161 IIIKMAEEGQVISCHTVESWNEQLQKGIAAKKLIVVDFTASWCPPCKLMSPILSELAKKLPAVIFL-KVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 505
            ++ K +E  + +      SW E +   + ++  ++VDF A WC PCKL++P++ ELAK+    I + K++ DE   +A ++ + ++PT +  K G+  E I+GA  K  L  ++EK+
Sbjct:   65 VVCKASEAVKEVQDVNDSSWKEFV---LESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGIATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKY 178          
BLAST of CN188168 vs. ExPASy Swiss-Prot
Match: THIO_CHLLT (Thioredoxin OS=Chlorobium limicola f.sp. thiosulfatophilum GN=trxA PE=1 SV=5)

HSP 1 Score: 67.3958 bits (163), Expect = 5.749e-11
Identity = 30/86 (34.88%), Postives = 57/86 (66.28%), Query Frame = -1
Query:  161 KLIVVDFTASWCPPCKLMSPILSELAKKLPA-VIFLKVDVDELKSVAEEWAVEAMPTFVLTKEGKVLERIVGA-KKDELQLAVEKH 412
            K ++VDF ASWC PC ++ P++ +LA       I  K++VDE  ++A ++ + ++PT ++ K GKV++++VGA  K+ +   +++H
Sbjct:   21 KAVLVDFWASWCGPCMMLGPVIEQLADDYEGKAIIAKLNVDENPNIAGQYGIRSIPTMLIIKGGKVVDQMVGALPKNMIAKKIDEH 106          
The following BLAST results are available for this feature:
BLAST of CN188168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 103
Match NameE-valueIdentityDescription
THIO_STAAR3.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain MRSA2... [more]
THIO_STAAN3.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain N315)... [more]
THIO_STAAM3.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain Mu50 ... [more]
THIO_STAAC3.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain COL) ... [more]
THIO_STAAB3.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain bovin... [more]
THIO_STAA83.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain NCTC ... [more]
THIO_STAA33.370e-1139.76Thioredoxin OS=Staphylococcus aureus (strain USA30... [more]
THIOM_BOVIN3.370e-1140.96Thioredoxin, mitochondrial OS=Bos taurus GN=TXN2 P... [more]
TRXM_SPIOL5.749e-1131.62Thioredoxin M-type, chloroplastic OS=Spinacia oler... [more]
THIO_CHLLT5.749e-1134.88Thioredoxin OS=Chlorobium limicola f.sp. thiosulfa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J18_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188168 ID=CN188168; Name=CN188168; organism=Citrus sinensis; type=EST; length=577bp
CTTTGGAGAGATGNCATTTATTCATATATACAGGCCTGTTAAACATGGTA
CCATATTCTTACATTAAGCAACCACAAACACACATCTTACAATAAAAGAC
CAGTGAGATTCATGTACGCATCAATCAAGCATTAGCAGTAGTTGCATTCT
CAACAGTTGCGTGCTTTTCGACAGCCAGCTGCAGCTCATCTTTCTTCGCT
CCCACAATCCTCTCCAGGACTTTGCCTTCTTTCGTCAGTACAAAGGTCGG
CATGGCTTCCACAGCCCATTCCTCAGCGACAGACTTCAATTCATCAACAT
CCACCTTCAAGAATATGACAGCGGGCAGCTTCTTCGCCAATTCACTCAAA
ATTGGAGACATCAACTTGCATGGCGGGCACCATGAAGCCGTAAAATCCAC
CACTATCAGTTTCTTTGCCGCAATGCCCTTTTGGAGCTGCTCGTTCCAGG
ATTCAACAGTGTGGCAGCTGATCACTTGTCCCTCCTCGGCCATCTTAATT
ATGATCACAAGTTAAATTACTTCTCTGTTCTGATTTCTTTATATTTGTTT
CTGTGTTTGGTGACGGAACTCTTGCCT
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