CN188161

Overview
NameCN188161
Unique NameCN188161
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7124 contig Csv1_Contig7124:309..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A_PORYE (Elongation factor 1-alpha OS=Porphyra yezoensis PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.230e-98
Identity = 176/242 (72.73%), Postives = 201/242 (83.06%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD----WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +S+ RY+E+ KE+  YLKKVGYNP KVP VP SG+ G+N+ ER+        WYKGP LL+ALDN + PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETG++KPGMVVTF PSGL+TEVKSVEMHHEAL +A PGDNVGFNVKNV+VKDLKRG+V  +
Sbjct:   79 KFETEKYSFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSQDRYEEVSKEMDLYLKKVGYNPAKVPKVPTSGWTGENLFERTDKTHALGKWYKGPCLLEALDNCDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGLIKPGMVVTFAPSGLSTEVKSVEMHHEALPQAGPGDNVGFNVKNVSVKDLKRGYVCGD 320          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A_CANAL (Elongation factor 1-alpha OS=Candida albicans GN=TEF1 PE=1 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.230e-98
Identity = 177/250 (70.80%), Postives = 205/250 (82.00%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y+ TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLA+TLGVKQ+I   NKMD+   K+ K R++EI+KE S+++KKVGYNP+ VPFVPISG+ GDNMIE STN  WYKG             TLL+A+D I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTF P+G+TTEVKSVEMHHE L E +PGDNVGFNVKNV+VK+++RG V  +
Sbjct:   79 KFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVKQLIVAVNKMDSV--KWDKNRFEEIIKETSNFVKKVGYNPKTVPFVPISGWNGDNMIEPSTNCPWYKGWEKETKSGKVTGKTLLEAIDAIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGVTTEVKSVEMHHEQLAEGVPGDNVGFNVKNVSVKEIRRGNVCGD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A3_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-3 PE=3 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.230e-98
Identity = 178/250 (71.20%), Postives = 204/250 (81.60%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLGV+Q+I   NKMD T  K+S+ RY+EIVKEVS ++KK+G+NP+ VPFVPISG+ GDNM++ STN+ W+KG             TLL+A+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+
Sbjct:   79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGVRQLIVAINKMDTT--KWSQDRYNEIVKEVSGFIKKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A_PICGU (Elongation factor 1-alpha OS=Pichia guilliermondii GN=TEF1 PE=3 SV=2)

HSP 1 Score: 356.295 bits (913), Expect = 9.443e-98
Identity = 176/250 (70.40%), Postives = 206/250 (82.40%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y+ TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLA+TLGV+Q+I   NKMD+   K+ K R++EI+KE S+++KKVGYNP+ VPFVPISG+ GDNMIE STN  WYKG             TLL+A+D I  P+RP+DKPLRLPLQDVYKIGGIGTVPVGRVETG++K GMVVTF P+G+TTEVKSVEMHHE L E +PGDNVGFNVKNV+VK+++RG V  +
Sbjct:   79 KFETPKYHVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAYTLGVRQLIVAVNKMDSV--KWDKNRFEEIIKETSNFVKKVGYNPKTVPFVPISGWNGDNMIEASTNCPWYKGWEKETKAGKSTGKTLLEAIDAIEPPQRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGIIKAGMVVTFAPAGVTTEVKSVEMHHEQLVEGVPGDNVGFNVKNVSVKEIRRGNVCGD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A1_EUPCR (Elongation factor 1-alpha 1 OS=Euplotes crassus GN=EFA1 PE=3 SV=1)

HSP 1 Score: 355.91 bits (912), Expect = 1.233e-97
Identity = 174/238 (73.11%), Postives = 199/238 (83.61%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET   + T+IDAPGHRDFIKNMITGTSQAD A+LII S TG FEAGISK+GQTREHALLA+T+GVKQM+   NKMD+T P YS+ RY+EI KEVS++L KVGY P K+ FVPISGF+GDN+ E STN+ WYKGPTL  ALD+   PKRP  KPLRLPLQDVYKIGGIGTVPVGRVETGVLK GMV+TF P G + E KSVEMHHE + EA PG+NVGFNVK ++VKD+KRGFVAS+
Sbjct:   79 KFETENRHYTIIDAPGHRDFIKNMITGTSQADAAILIIASGTGEFEAGISKEGQTREHALLAYTMGVKQMVVAMNKMDSTEPPYSEDRYEEIKKEVSTFLAKVGYKPAKMNFVPISGFQGDNIQENSTNMPWYKGPTLCAALDSFKIPKRPIAKPLRLPLQDVYKIGGIGTVPVGRVETGVLKAGMVITFAPKGCSAECKSVEMHHEEVPEAAPGNNVGFNVKGLSVKDIKRGFVASD 316          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A_CRYNE (Elongation factor 1-alpha OS=Cryptococcus neoformans GN=TEF1 PE=2 SV=2)

HSP 1 Score: 355.14 bits (910), Expect = 2.104e-97
Identity = 176/250 (70.40%), Postives = 204/250 (81.60%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET RY  TVIDAPGHRDFIKNMITGTSQADCA+LII +  G FEAGISKDGQTREHALLAFTLGV+Q+I  CNKMD  T K+S+ R++EIVKE + ++KKVGYNP+ VPFVPISG+ GDNM+E +TN+ WYKG             TLL+A+D I  P RP+DKPLRLPLQDVYKIGGIGTVPVGRVETGV+K GMVV F P+ +TTEVKSVEMHHE + E LPGDNVGFNVKNV++KD++RG V  +
Sbjct:   79 KFETPRYQVTVIDAPGHRDFIKNMITGTSQADCAILIIATGIGEFEAGISKDGQTREHALLAFTLGVRQLIVACNKMD--TCKWSEDRFNEIVKETNGFIKKVGYNPKAVPFVPISGWHGDNMLEETTNMPWYKGWTKETKSGVSKGKTLLEAIDAIEPPTRPTDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVKFAPTNVTTEVKSVEMHHEQIPEGLPGDNVGFNVKNVSIKDIRRGNVCGD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1AC_PORPU (Elongation factor 1-alpha C OS=Porphyra purpurea GN=TEF-C PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.104e-97
Identity = 177/242 (73.14%), Postives = 200/242 (82.64%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD----WYKGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y  T+IDAPGHRDFIKNMITGTSQAD A+L+I S  G FEAGIS++GQTREHALLA+TLGVKQMI  CNKMD     +SK RY+E+ KE+  YLKKVGYNP KVP VP SG+ G+N+ ER+        WYKGP LL+ALD  + PKRP DKPLRLPLQDVYKIGGIGTVPVGRVETGV+KPGMVVTF PSGL+TEVKSVEMHHEAL +A PGDNVGFNVKNV+VKDLKRG+V  +
Sbjct:   79 KFETDKYNFTIIDAPGHRDFIKNMITGTSQADLAILVIASPPGEFEAGISQNGQTREHALLAYTLGVKQMIVACNKMDDKNVNWSKERYEEVSKEMDLYLKKVGYNPPKVPKVPTSGWTGENLFERTGGDHALGKWYKGPCLLEALDACDPPKRPVDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPSGLSTEVKSVEMHHEALTQAGPGDNVGFNVKNVSVKDLKRGYVCGD 320          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A2_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-2 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.747e-97
Identity = 177/250 (70.80%), Postives = 203/250 (81.20%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T  K+S+ RY+EIVKEVS ++KK+G+NP+ VPFVPISG+ GDNM++ STN+ W+KG             TLL+A+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+
Sbjct:   79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT--KWSQDRYNEIVKEVSGFIKKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A1_RHIRA (Elongation factor 1-alpha OS=Rhizomucor racemosus GN=TEF-1 PE=3 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 2.747e-97
Identity = 177/250 (70.80%), Postives = 203/250 (81.20%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKG------------PTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KFET +Y  TVIDAPGHRDFIKNMITGTSQADCA+LII   TG FEAGISKDGQTREHALLAFTLG +Q+I   NKMD T  K+S+ RY+EIVKEVS ++KK+G+NP+ VPFVPISG+ GDNM++ STN+ W+KG             TLL+A+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETG +K GMVV F P+ +TTEVKSVEMHHE L E LPGDNVGFNVKNV+VKD++RG V S+
Sbjct:   79 KFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGTGEFEAGISKDGQTREHALLAFTLGFRQLIVAINKMDTT--KWSQDRYNEIVKEVSGFIKKIGFNPKSVPFVPISGWHGDNMLDESTNMPWFKGWNKETKAGSKTGKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGTIKAGMVVNFAPAAVTTEVKSVEMHHETLTEGLPGDNVGFNVKNVSVKDIRRGNVCSD 326          
BLAST of CN188161 vs. ExPASy Swiss-Prot
Match: EF1A_YARLI (Elongation factor 1-alpha OS=Yarrowia lipolytica GN=TEF PE=2 SV=2)

HSP 1 Score: 354.369 bits (908), Expect = 3.588e-97
Identity = 180/251 (71.71%), Postives = 204/251 (81.27%), Query Frame = 3
Query:    6 KFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWY------------KGPTLLDALDNINEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQE-ALPGDNVGFNVKNVAVKDLKRGFVASN 719
            KF+T +YY TVIDAPGHRDFIKNMITGTSQADCA+LII    G FEAGISKDGQTREHALLAFTLGVKQ+I   NKMD+   K+S+ RY+EI KE ++++KKVGYNP+ VPFVPISG+ GDNMIE STN DWY            KG TLL+A+D I  P RPSDKPLRLPLQDVYKIGGIGTVPVGRVETGV+K GMVVTF P+ +TTEVKSVEMHHE L +   PGDNVGFNVKNV+VKD++RG VA +
Sbjct:   79 KFQTPKYYVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVKQLIVAINKMDSV--KWSQDRYNEICKETANFVKKVGYNPKSVPFVPISGWNGDNMIEASTNCDWYKGWTKETKAGEVKGKTLLEAIDAIEPPVRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVIKAGMVVTFAPANVTTEVKSVEMHHEILPDGGFPGDNVGFNVKNVSVKDIRRGNVAGD 327          
The following BLAST results are available for this feature:
BLAST of CN188161 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_PORYE7.230e-9872.73Elongation factor 1-alpha OS=Porphyra yezoensis PE... [more]
EF1A_CANAL7.230e-9870.80Elongation factor 1-alpha OS=Candida albicans GN=T... [more]
EF1A3_RHIRA7.230e-9871.20Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_PICGU9.443e-9870.40Elongation factor 1-alpha OS=Pichia guilliermondii... [more]
EF1A1_EUPCR1.233e-9773.11Elongation factor 1-alpha 1 OS=Euplotes crassus GN... [more]
EF1A_CRYNE2.104e-9770.40Elongation factor 1-alpha OS=Cryptococcus neoforma... [more]
EF1AC_PORPU2.104e-9773.14Elongation factor 1-alpha C OS=Porphyra purpurea G... [more]
EF1A2_RHIRA2.747e-9770.80Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A1_RHIRA2.747e-9770.80Elongation factor 1-alpha OS=Rhizomucor racemosus ... [more]
EF1A_YARLI3.588e-9771.71Elongation factor 1-alpha OS=Yarrowia lipolytica G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188161 ID=CN188161; Name=CN188161; organism=Citrus sinensis; type=EST; length=719bp
AGTTGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGATGCTCCT
GGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACAGGCTGA
CTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTTTTGAAGCTGGTA
TCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTCACCCTT
GGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCACCACCCC
CAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCTCTTCCT
ACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTGCCCATC
TCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCTTGACTG
GTACAAGGGTCCAACCCTGCTGGATGCTCTTGACAATATCAATGAGCCGA
AGAGGCCCTCAGACAAGCCCCTTCGTCTGCCACTCCAGGACGTGTACAAG
ATTGGTGGCATTGGAACCGTCCCAGTGGGTCGCGTTGAGACCGGTGTGCT
CAAGCCTGGTATGGTGGTGACATTTGGTCCCTCTGGATTGACAACTGAGG
TTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGGT
GACAATGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCG
TGGTTTTGTTGCTTCCAAC
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