EY666008

Overview
NameEY666008
Unique NameEY666008
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: PBPA_STRR6 (Penicillin-binding protein 1A OS=Streptococcus pneumoniae (strain ATCC BAA-255 / R6) GN=pbpA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 54/176 (30.68%), Postives = 84/176 (47.73%), Query Frame = 3
Query:   39 DQISDELKVAVMAGEDQRFPQHWGFDFDAIQAALLHNERGGSIRGASTLSQQVSKNLFLWTGRS---YFRKGLEAWFTGLIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSAKALTRQQASYLAAVLPNPRVWSA-SHPTSYVARRAAWIRQQMSQ--LGGDSYLNELN 548
            + I  +L  A+++ ED RF  H G D   I  A L N +  S++G S L+QQ+ K  +  T  S     RK  EAW    +E    KQ IL  Y+N V    G +G + AA++++G     L+  Q + LA +   P  +   SHP +   RR   + +  +Q  +  + Y   +N
Sbjct:   77 NDIPTDLVKAIVSIEDHRFFDHRGIDTIRILGAFLRNLQSNSLQGGSALTQQLIKLTYFSTSTSDQTISRKAQEAWLAIQLEQKATKQEILTYYINKVYMSNGNYGMQTAAQNYYGKDLNNLSLPQLALLAGMPQAPNQYDPYSHPEAAQDRRNLVLSEMKNQGYISAEQYEKAVN 252          
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: MGT_STAS1 (Monofunctional glycosyltransferase OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=mgt PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.663e-13
Identity = 51/178 (28.65%), Postives = 87/178 (48.88%), Query Frame = 3
Query:    9 IDVQRTWVPWDQISDELKVAVMAGEDQRFPQHWGFDFDAIQAALLHNERGGSIRGASTLSQQVSKNLFLWTGRSYFRKGLEAWFTGLIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSA-------KALTRQQASYLAAVLPNPRVWSASHPTSYVARRAAWIRQQMSQLG 521
            I  + ++V    + D  K A +A ED+RF +H GFD      AL       S++G ST++QQV KN +    +S  RK  E +    +E  + K  IL  Y+N++ +    +  E+AA H+FGV+          ++  Q++ LA+ +  P V++ +  +     R     ++M Q G
Sbjct:   77 ITEKESFVYASDMRDYTKGAFIAMEDERFYKHHGFDVKGTSRALFSTLSDKSVQGGSTITQQVVKNYYYDNEQSITRKIKELFVAHRVEKEYDKNEILSFYMNNIYYGSDQYTIESAANHYFGVTTDKNNPNLPQISVLQSAILASKINAPSVYNINDMSDNFTNRVKTDLEKMKQQG 254          
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: PBPA_CLOPE (Penicillin-binding protein 1A OS=Clostridium perfringens GN=pbpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   18 QRTWVPWDQISDELKVAVMAGEDQRFPQHWGFDFDAIQAALLHNERG-----GSIRGASTLSQQVSKNLFLWTGRSYFRKGLEAWFTGLIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSAKALTRQQASYLAAVLPNPRVW------SASHPTSYVARRAAWI--RQQMSQLGGDSYLNELN 548
            QR  V  ++I D LK A +A ED+RF +H G D   I   +  N +G      +++GAST++QQ+ KN  L    SY RK  E +    +E    K  IL  YLN++      +G  AAA+  F  +   L   + +YL  +   P  +      +  +P+ Y+ R  + +    ++  +  + Y + +N
Sbjct:   90 QRYVVKSEEIPDNLKKAFVAIEDERFYEHKGIDIKRIFGVIASNIKGKLSGSNTVQGASTITQQLIKNAVLTNEVSYERKIKEMYLALELEKHLSKDEILTTYLNTIPMGGYQYGVSAAAQRFFSKNVSDLNLVECAYLGGLTQAPTSYDGLSEANKENPSRYLNRTKSVLFKMHELGYISSEQYNDAIN 279          
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: PBPA_CLOP1 (Penicillin-binding protein 1A OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=pbpA PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.933e-13
Identity = 54/190 (28.42%), Postives = 90/190 (47.37%), Query Frame = 3
Query:   18 QRTWVPWDQISDELKVAVMAGEDQRFPQHWGFDFDAIQAALLHNERG-----GSIRGASTLSQQVSKNLFLWTGRSYFRKGLEAWFTGLIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSAKALTRQQASYLAAVLPNPRVW------SASHPTSYVARRAAWI--RQQMSQLGGDSYLNELN 548
            QR  V  ++I D LK A +A ED+RF +H G D   I   +  N +G      +++GAST++QQ+ KN  L    SY RK  E +    +E    K  IL  YLN++      +G  AAA+  F  +   L   + +YL  +   P  +      +  +P+ Y+ R  + +    ++  +  + Y + +N
Sbjct:   90 QRYVVKSEEIPDNLKKAFVAIEDERFYEHKGIDIKRIFGVIASNIKGKLSGSNTVQGASTITQQLIKNAVLTNEVSYERKIKEMYLALELEKHLSKDEILTTYLNTIPMGGYQYGVSAAAQRFFSKNVSDLNLVECAYLGGLTQAPTSYDGLSEANKENPSRYLNRTKSVLFKMHELGYISSEQYNDAIN 279          
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: PBPA_CLOAB (Penicillin-binding protein 1A OS=Clostridium acetobutylicum GN=pbpA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 56/190 (29.47%), Postives = 95/190 (50.00%), Query Frame = 3
Query:   57 LKVAVMAGEDQRFPQHWGFDFDAIQAALLHN-----ERGGSIRGASTLSQQVSKNLFLWTGR-----SYFRKGLEAWFTGLIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSAKALTRQQASYLAAVLPNPRVW------SASHPTSYVARR--AAWIRQQMSQLGGDSY---LNELNNSRKA 563
            L  A ++ ED+RF +H G D   I  A  ++      +  SI+GAST++QQ+ KN            S+ RK  EA+ +  +E    K +ILE Y+N++       G EAA+R +F  SAK L   + +++A +  +P  +       A +P  Y+ R     +  +Q + +   +Y   +N+LNN++ A
Sbjct:  105 LSNAFVSIEDERFYKHSGIDTKRILGAFYNDIKSKIHKQNSIQGASTITQQLIKNRMFLNDSLENRISFKRKIQEAYLSIKLEQSLSKSQILEAYMNTIFLGVQANGVEAASRQYFNKSAKDLNLIECAFIAGLAQSPSAYYPFSQNVAKNPNIYLDRTKLVLYKMRQNNYIDFSTYQNAINDLNNNKLA 294          
BLAST of EY666008 vs. ExPASy Swiss-Prot
Match: PBPA_CLONN (Penicillin-binding protein 1A OS=Clostridium novyi (strain NT) GN=pbpA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 62/221 (28.05%), Postives = 105/221 (47.51%), Query Frame = 3
Query:   30 VPWDQISDELKVAVMAGEDQRFPQHWGFDFDAIQAALLHNERG-----GSIRGASTLSQQVSKNLFLWT-GRSY---FRKGLEAWFTG-LIEILWPKQRILEVYLNSVEWDEGVFGAEAAARHHFGVSAKALTRQQASYLAAVLPNPRVW------SASHPTSYVARRAAWIRQQ-----MSQLGGDSYLNELNNSRKAPWAD*HPPKQLQELGREAVASP 629
            V +D++ + L  A ++ ED+RF +H G D   I  A L + +       +++GAST++QQ+ KN    T G S     R+ ++ W+    +E    K+ I+E YLN++       G  AAA  +F VS   L   Q +++A +  +P V+      S   P+ Y+ R    + +      +SQ    S L EL+ S+     D    + +Q LG+  +  P
Sbjct:   93 VKYDEVPENLINAFVSIEDERFFKHSGIDVKRIAGAFLIDMKNIVSGKPALQGASTITQQLIKNTVFETHGNSLNDKLRRKVQEWYLAPKLEKEVGKKSIMEAYLNTIYLGGRAIGVGAAADQYFNVSIDKLDLVQCAFIAGLPQSPSVYYPYSRTSKKDPSKYINRTKTVLAKMKENGYISQNEYISALAELDTSKSTVTND----ESIQTLGQYTIHKP 309          
The following BLAST results are available for this feature:
BLAST of EY666008 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 226
Match NameE-valueIdentityDescription
PBPA_STRR62.663e-1330.68Penicillin-binding protein 1A OS=Streptococcus pne... [more]
MGT_STAS12.663e-1328.65Monofunctional glycosyltransferase OS=Staphylococc... [more]
PBPA_CLOPE5.933e-1328.42Penicillin-binding protein 1A OS=Clostridium perfr... [more]
PBPA_CLOP15.933e-1328.42Penicillin-binding protein 1A OS=Clostridium perfr... [more]
PBPA_CLOAB3.256e-1129.47Penicillin-binding protein 1A OS=Clostridium aceto... [more]
PBPA_CLONN4.252e-1128.05Penicillin-binding protein 1A OS=Clostridium novyi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-F10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666008 ID=EY666008; Name=EY666008; organism=Citrus sinensis; type=EST; length=884bp
GCGAGCCGATTGACGTACAGCGCACCTGGGTGCCGTGGGATCAGATCTCC
GACGAGCTTAAAGTGGCGGTGATGGCGGGCGAAGACCAGCGCTTCCCGCA
GCATTGGGGTTTTGATTTCGACGCGATCCAGGCGGCGTTGCTGCATAACG
AGCGCGGCGGTTCGATTCGCGGCGCCAGCACCTTGAGCCAGCAGGTGTCG
AAGAACCTGTTTTTGTGGACCGGACGCAGCTATTTCCGCAAGGGCCTGGA
AGCCTGGTTTACCGGGCTGATCGAGATTCTCTGGCCCAAGCAGCGAATTC
TTGAGGTCTACCTCAACAGCGTGGAATGGGATGAAGGCGTGTTCGGCGCC
GAAGCGGCAGCGCGGCATCATTTTGGGGTGAGTGCCAAGGCGCTGACCCG
CCAGCAGGCCAGCTACCTGGCGGCGGTGCTGCCTAACCCACGGGTGTGGA
GCGCCAGCCATCCAACATCGTATGTGGCGCGACGGGCGGCGTGGATTCGG
CAGCAGATGAGTCAGTTGGGTGGCGACAGCTACCTGAATGAGCTGAACAA
CTCGCGCAAGGCGCCTTGGGCTGACTGACACCCCCCAAAGCAACTGCAAG
AACTGGGCCGCGAGGCCGTTGCGTCACCGCATCCCCAATCAACACGCGGG
GGGAGGCGGAGCGCGGGGCGGGACGAGAGGAGTGTCACGGCGTCCGCCGG
CGCCGGGCGGGGCGGGGGGATGGTGGGTGCCGCGGCGGGGGTGAGGGGGG
GGGGAGACGGGGGCGACCGCCCGGCAATCGGTAGGTATGACCACGCTGCG
CGGGCACTCAGCGCCGCAGACGGCGGGGCCGCACCCCGAGCCGGCCGGCC
CCGGGCGGCGCGGGGGGGGCGGCGGGTCCGCCGT
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