CN188156

Overview
NameCN188156
Unique NameCN188156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO1_MALDO (1-aminocyclopropane-1-carboxylate oxidase 1 OS=Malus domestica PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.571e-26
Identity = 63/181 (34.81%), Postives = 100/181 (55.25%), Query Frame = -1
Query:  193 PNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVD--DENPPKYKAKKFKDY 723
            P+    YR   +E+A  + ++ +KL              LK+   G     +  K++ YPPCP+PDL  G+ AH+D   + +L  ++ V GLQ+ KD  W+D   + +++VI++GDQIE+++NGKYK+V+HR     D TRMS   F  P  D+ + P P +++   E+ P Y    F DY
Sbjct:  104 PDLEEEYRKTMKEFAVELEKLAEKLLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHSDAGGIILLFQDDKVSGLQLLKDGEWVDVPPMHHSIVINLGDQIEVITNGKYKSVMHRVIAQSDGTRMSIASFYNPGNDSFISPAPAVLEKKTEDAPTYPKFVFDDY 284          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO_PRUMU (1-aminocyclopropane-1-carboxylate oxidase OS=Prunus mume GN=ACO1 PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 67/182 (36.81%), Postives = 103/182 (56.59%), Query Frame = -1
Query:  193 PNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPK---YKAKKFKDY 723
            P+    YR V +E+A  + ++ ++L              LK+A  G +   +  K++ YPPCP P+L  G+ AHTD   L +L  ++ V GLQ+ KD +WID   + +++VI++GDQ+E+++NGKY++V HR     D TRMS   F  P +D V+ P P LV+ E   K   Y    F+DY
Sbjct:  104 PDLEDQYRNVMKEFALKLEKLAEQLLDLLCENLGLEKGYLKKAFYGTNGPTFGTKVSNYPPCPNPELIKGLRAHTDAGGLILLFQDDKVSGLQLLKDGQWIDVPPMRHSIVINLGDQLEVITNGKYRSVEHRVIAQTDGTRMSIASFYNPGSDAVIYPAPTLVEKEAEEKNQVYPKFVFEDY 285          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO_DIACA (Probable 1-aminocyclopropane-1-carboxylate oxidase OS=Dianthus caryophyllus GN=ACO PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.969e-26
Identity = 66/188 (35.11%), Postives = 104/188 (55.32%), Query Frame = -1
Query:  178 PNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV--DDENPPKYKAKKFKDYS--YCKL 723
            P+    YR + +E+A  +  + ++L              LK A  G +   +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NGKYK+V+HR     D  RMS   F  P +D V+ P P LV  ++E    Y    F+DY   Y KL
Sbjct:  110 PDLDDQYRKLMKEFAAQIERLSEQLLDLLCENLGLEKAYLKNAFYGANGPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGHWVDVPPMKHSIVVNLGDQLEVITNGKYKSVMHRVIAQTDGNRMSIASFYNPGSDAVIYPAPTLVEKEEEKCRAYPKFVFEDYMNLYLKL 297          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: IDS3_HORVU (2'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vulgare GN=IDS3 PE=1 SV=3)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 58/178 (32.58%), Postives = 91/178 (51.12%), Query Frame = -1
Query:  193 WPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 726
            WP+ P   R V E++    R+V  +L               +    G ++  +L IN+YP CP PD ALG   H D + +T+L+P  V GL+V     WI     PNA V++ G Q+E+++NG  K++ HR   +    R S   F+ P  + ++GP  + +  ENPP Y+   F+D+
Sbjct:  138 WPDTPKGLRDVIEKFTSQTRDVGKELLRLLCEGMGIQADYFEGDLSGGNV--ILNINHYPSCPNPDKALGQPPHCDRNLITLLLPGAVNGLEVSYKGDWIKVDPAPNAFVVNFGQQLEVVTNGLLKSIEHRAMTNSALARTSVATFIMPTQECLIGPAKEFLSKENPPCYRTTMFRDF 313          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G3O22_WHEAT (Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aestivum GN=GA3ox2-2 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.330e-25
Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = -1
Query:  193 RFWPNNPPSYR---AVNEEYAKYMREVVDKLFTYXXXXXXXXXXXL----KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 732
            + WP     YR   AV EE+ + MR + DKL              +     E    + +   + +N+YP CP P  ALG++AHTD    T ++ + VPGLQ+F+   DRW+    +P A+V+++GD  +IL+NG++ +V HR  V++D  R+S   FL PPA   V PL + +    P  Y+A  + +Y
Sbjct:  147 KLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEQKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAG-TPAAYRAVTWPEY 334          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G3O21_WHEAT (Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aestivum GN=GA3ox2-1 PE=1 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.737e-25
Identity = 65/189 (34.39%), Postives = 101/189 (53.44%), Query Frame = -1
Query:  193 RFWPNNPPSYR---AVNEEYAKYMREVVDKLFTYXXXXXXXXXXXL----KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKD--DRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 732
            + WP     YR   AV EE+ + MR + DKL              +     E    + +   + +N+YP CP P  ALG++AHTD    T ++ + VPGLQ+F+   DRW+    +P A+V+++GD  +IL+NG++ +V HR  V++D  R+S   FL PPA   V PL + +    P  Y+A  + +Y
Sbjct:  147 KLWPKAGHDYRHFCAVMEEFHREMRALADKLLELFLVALGLTGEQVAAVESEHKIAETMTATMHLNWYPKCPDPKRALGLIAHTDSGFFTFVLQSLVPGLQLFRHGPDRWVTVPAVPGAMVVNVGDLFQILTNGRFHSVYHRAVVNRDSDRISLGYFLGPPAHVKVAPLREALAG-TPAAYRAVTWPEY 334          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: SRG1_ARATH (Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 60/180 (33.33%), Postives = 98/180 (54.44%), Query Frame = -1
Query:  190 WPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYS 726
            +P  P  +R   E Y+  ++ V   L              L++     D    +++NYYPPCP+PD  +G+  H+D   LTVL+  N+V GLQ+ KD +W+  K +PNA +++IGD +EI++NG Y+++ HR  V+ +K R+S   F        VGP   LV+ +   ++K    K+Y+
Sbjct:  160 FPKLPLPFRDTLEMYSSEVQSVAKILIAKMARALEIKPEELEKLFDDVDSVQSMRMNYYPPCPQPDQVIGLTPHSDSVGLTVLMQVNDVEGLQIKKDGKWVPVKPLPNAFIVNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARFKRLTMKEYN 339          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO2_DORSP (1-aminocyclopropane-1-carboxylate oxidase 2 OS=Doritaenopsis sp. GN=ACO2 PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.268e-25
Identity = 67/193 (34.72%), Postives = 103/193 (53.37%), Query Frame = -1
Query:  172 PNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEA-AGGDD--IEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLV-----DDENPPKYKAKKFKDYSYCKLNK 723
            P+     RA  +E+A+ + ++ ++L              LK    GG D    +  K++ YPPCP+PDL  G+ AHTD   + +L  ++ V GLQ+ KD  WI+   +  ++V++IGDQ+E+++NGKYK+VLHR     D  RMS   F  P +D V+ P P LV     ++E    Y    F+DY    + K
Sbjct:  106 PDLDDDCRATMKEFARELEKLAERLLDLLCEDLGLEKGYLKRVFCGGSDGLPTFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDREWIEVPPLRYSIVVNIGDQLEVITNGKYKSVLHRVVAQTDGNRMSIASFYNPGSDAVIFPAPALVEKEAEEEEKKEIYPKFVFQDYMNLYIRK 298          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO3_CUCME (1-aminocyclopropane-1-carboxylate oxidase 3 OS=Cucumis melo GN=ACO3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.963e-25
Identity = 66/182 (36.26%), Postives = 96/182 (52.75%), Query Frame = -1
Query:  178 VNEEYAKYMREVVDKLFTYXXXXXXXXXXXL--------KEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKL 696
            ++EEY K M+E  D+L              L        K   G     +  K++ YPPCP+P+L  G+ AHTD   L +L  ++ V GL V KD +W+D   + +++VI++GDQ+E+++NGKYK+V+HR    +D  RMS   F  P  D V+ P P LV+ E        KF    Y KL
Sbjct:  107 LDEEYKKVMKEFADELEKLAEEVLDLLCENLGLEKGYLKKVFYGSKGPNFGTKVSNYPPCPKPELIKGLRAHTDAGGLILLFQDDKVSGLHVLKDGKWVDVPPMHHSIVINLGDQLEVITNGKYKSVMHRVIAQEDGNRMSIASFYNPGNDAVIYPAPALVEGEQEKTKLYPKFVFDDYMKL 288          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCH3_SOLLC (1-aminocyclopropane-1-carboxylate oxidase homolog OS=Solanum lycopersicum GN=ACO3 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.963e-25
Identity = 52/126 (41.27%), Postives = 84/126 (66.67%), Query Frame = -1
Query:  190 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFL-EPP--ADTVVGPLPQLVDDENPPKYKAKKFKDYS 558
            NYYPPCP+P+L +G + HTD+  +T+L+ +++ GLQV   + W+D    P +LV++IGD +++LSN KY +V HR   +   +RMS   F  E P  +  + GP+ +L+ ++NPPKY+A   KD++
Sbjct:  219 NYYPPCPQPELTMGTIQHTDIGFVTILLQDDMGGLQVLHQNHWVDVPPTPGSLVVNIGDFLQLLSNDKYLSVEHRAISNNVGSRMSITCFFGESPYQSSKLYGPITELLSEDNPPKYRATTVKDHT 344          
The following BLAST results are available for this feature:
BLAST of CN188156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
ACCO1_MALDO4.571e-2634.811-aminocyclopropane-1-carboxylate oxidase 1 OS=Mal... [more]
ACCO_PRUMU5.969e-2636.811-aminocyclopropane-1-carboxylate oxidase OS=Prunu... [more]
ACCO_DIACA5.969e-2635.11Probable 1-aminocyclopropane-1-carboxylate oxidase... [more]
IDS3_HORVU1.330e-2532.582'-deoxymugineic-acid 2'-dioxygenase OS=Hordeum vu... [more]
G3O22_WHEAT1.330e-2534.39Gibberellin 3-beta-dioxygenase 2-2 OS=Triticum aes... [more]
G3O21_WHEAT1.737e-2534.39Gibberellin 3-beta-dioxygenase 2-1 OS=Triticum aes... [more]
SRG1_ARATH2.268e-2533.33Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 ... [more]
ACCO2_DORSP2.268e-2534.721-aminocyclopropane-1-carboxylate oxidase 2 OS=Dor... [more]
ACCO3_CUCME2.963e-2536.261-aminocyclopropane-1-carboxylate oxidase 3 OS=Cuc... [more]
ACCH3_SOLLC2.963e-2541.271-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188156 ID=CN188156; Name=CN188156; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTAACATTAAGGATTATTTATTATTGCTAATACCCGCGATTACA
TTTCAGAAACAAGATCGCAACAACAAACAAGAATCGATAAACGTACAGTG
ACGAGATAAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCATA
ATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATCCT
TGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCTGA
GGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGCCA
CGACATTCTCGTCTTGTCCTTGCTAACAGTGGTTCTATGCAGCACAGCTT
TGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGACG
AGAGCGTTGGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAGAC
TTGCAGACCAGGAACTTCATTGGGAACAAGAACGGTGAGGGCAGAAAGAT
CAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCGGA
TAATAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCTTC
TTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAACA
ACTTATCCACCACCTCCCTCATGTACTTTGCGTACTCCTCATTCACCGCT
CGGTAAGAAGGAGGGTTGTTGGGCCAGAAGCGGTAGTT
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