CN188156

Overview
NameCN188156
Unique NameCN188156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: NCS1_COPJA (S-norcoclaurine synthase 1 OS=Coptis japonica GN=NCS1 PE=1 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 66/183 (36.07%), Postives = 97/183 (53.01%), Query Frame = -1
Query:  193 NYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVP-NEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 738
            N RFWP +P S+R   E+Y+  +++V   L              L +        +  +    P        LG+  H+D + LT+L+  NEV GL + KD++W+  K I  A V++IGD IEI+SNG YK++ HR  ++ DK R+S   F +P   T +GPLP LV  EN  KYK   ++DY
Sbjct:  154 NMRFWPTSPTSFRETMEKYSMELQKVAMCLTGMMAKNLGLESEILTKPLR---TVFNREDELLPSMSSCGEGLGLSPHSDATGLTLLIQVNEVNGLHIKKDEKWVPIKPILGAFVVNIGDVIEIMSNGIYKSIEHRAVINTDKERLSIAAFHDPEYGTKIGPLPDLV-KENGVKYKTIDYEDY 332          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: FL3H_MALDO (Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus domestica PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.621e-23
Identity = 63/201 (31.34%), Postives = 104/201 (51.74%), Query Frame = -1
Query:  169 NYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENP---------PKYKAKKFKDYSYCKLNKL 738
            +Y  WP+ P ++R V ++Y+  +  +  KL              L +A    D++  + +N+YP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +DD   WI  + +  A V+++GD   +LSNG++K   H+  V+ + +R+S   F  P  + +V PL  + + E P           YK K  KD    +L KL
Sbjct:  143 DYSRWPDKPEAWREVTKKYSDELMGLACKLLGVLSEAMGLDTEALTKACV--DMDQKVVVNFYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGKTWITVQPVEGAFVVNLGDHGHLLSNGRFKNADHQAVVNSNSSRLSIATFQNPAQEAIVYPL-SVREGEKPILEAPITYTEMYKKKMSKDLELARLKKL 340          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCO1_ARATH (1-aminocyclopropane-1-carboxylate oxidase OS=Arabidopsis thaliana GN=ACO PE=2 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 60/184 (32.61%), Postives = 101/184 (54.89%), Query Frame = -1
Query:  193 PNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAA-GGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNE-VPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKD-KTRMSWPVFLEPPADTVVGPLPQLV----DDENPPKYKAKKFKDY 723
            P+    YR + +++A  + ++ ++L              LK+   G     +  K++ YPPCP PDL  G+ AHTD   + +L  ++ V GLQ+ KD  W+D   + +++V+++GDQ+E+++NGKYK+V HR     D + RMS   F  P +D+V+ P P+L+    + E    Y    F+DY
Sbjct:  104 PDLDDDYRTLMKDFAGKIEKLSEELLDLLCENLGLEKGYLKKVFYGSKRPTFGTKVSNYPPCPNPDLVKGLRAHTDAGGIILLFQDDKVSGLQLLKDGEWVDVPPVKHSIVVNLGDQLEVITNGKYKSVEHRVLSQTDGEGRMSIASFYNPGSDSVIFPAPELIGKEAEKEKKENYPRFVFEDY 287          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: GAOX3_ARATH (Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana GN=20ox3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 6.177e-23
Identity = 62/186 (33.33%), Postives = 101/186 (54.30%), Query Frame = -1
Query:  139 VNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSYCKLNKLPQ*IFHYEKN 696
            V +EYA+ M  +  K+               KE    +D + + ++NYYP C +P+LALG   H D ++LT+L  ++V GLQVF D++W      P+A V++IGD    L+NG+YK+ LHR  V+ ++ R ++  FL P  + VV P  +LV   N  K   +K+ D+++    +  Q  +  + N
Sbjct:  185 VYQEYAEAMNTLSLKIMELLGMSLGVERRYFKEFF--EDSDSIFRLNYYPQCKQPELALGTGPHCDPTSLTILHQDQVGGLQVFVDNKWQSIPPNPHAFVVNIGDTFMALTNGRYKSCLHRAVVNSERERKTFAFFLCPKGEKVVKPPEELV---NGVKSGERKYPDFTWSMFLEFTQKHYRADMN 365          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: FL3H_MATIN (Naringenin,2-oxoglutarate 3-dioxygenase (Fragment) OS=Matthiola incana GN=FHT PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.054e-22
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -1
Query:  169 NYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD----ENP----PKYKAKKFKDYSYCKLNKL 738
            +Y  WP+ P  +  V EEY++ +  +  KL              L  A    D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +DD   WI  + +  A V+++GD    LSNG++K   H+  V+ + +R+S   F  P  +  V PL     +    E P      YK K  +D    +L KL
Sbjct:  141 DYSRWPDKPQGWAKVTEEYSEKLMGLACKLLEVLSEAMGLEKESLTNACV--DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDDGNTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPEATVYPLKVREGEKAIMEEPITFAEMYKRKMGRDLELARLKKL 338          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: FL3H_ARATH (Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabidopsis thaliana GN=F3H PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.376e-22
Identity = 64/200 (32.00%), Postives = 99/200 (49.50%), Query Frame = -1
Query:  169 NYRFWPNNPPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDD--RWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDD----ENP----PKYKAKKFKDYSYCKLNKL 738
            +Y  WP+ P  +  V EEY++ +  +  KL              L  A    D++  + +NYYP CP+PDL LG+  HTD   +T+L+ ++V GLQ  +D+   WI  + +  A V+++GD    LSNG++K   H+  V+ + +R+S   F  P  D  V PL     +    E P      YK K  +D    +L KL
Sbjct:  142 DYSRWPDKPEGWVKVTEEYSERLMSLACKLLEVLSEAMGLEKESLTNACV--DMDQKIVVNYYPKCPQPDLTLGLKRHTDPGTITLLLQDQVGGLQATRDNGKTWITVQPVEGAFVVNLGDHGHFLSNGRFKNADHQAVVNSNSSRLSIATFQNPAPDATVYPLKVREGEKAILEEPITFAEMYKRKMGRDLELARLKKL 339          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: DV4H_CATRO (Deacetoxyvindoline 4-hydroxylase OS=Catharanthus roseus GN=D4H PE=1 SV=2)

HSP 1 Score: 106.301 bits (264), Expect = 1.797e-22
Identity = 59/181 (32.60%), Postives = 99/181 (54.70%), Query Frame = -1
Query:  193 PPSYRAVNEEYAKYMREVVDKLFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFL-------EPPADTVVGPLPQLVDDENPPKYKAKKFKDY 714
            P   R +  +Y+ Y+R +   LF             L+E    + +  +L  +YYP CP+P+L  G   H+D   LT+L+ +++ GLQ+  +++WID  +IP ALVI+I D +++++N K+K+V HR   +K   R+S  V         E  +  + GP+ +L+ +ENPP YK    KD+
Sbjct:  201 PDVCRDILMKYSNYVRNLGLILFELLSEALGLKPNHLEEMDCAEGL--ILLGHYYPACPQPELTFGTSKHSDSGFLTILMQDQIGGLQILLENQWIDVPFIPGALVINIADLLQLITNDKFKSVEHRVLANKVGPRISVAVAFGIKTQTQEGVSPRLYGPIKELISEENPPIYKEVTVKDF 379          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSJ (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. japonica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -1
Query:  217 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 582
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A+VI+IGD    LSNG+YK+ LHR  V++ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: GAOX2_ORYSI (Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. indica GN=20ox2 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 51/122 (41.80%), Postives = 72/122 (59.02%), Query Frame = -1
Query:  217 DIEYMLKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKY 582
            D   +++ NYYPPCP P+  LG   H D +ALT+L+ ++V GL+V  D  W     +P A+VI+IGD    LSNG+YK+ LHR  V++ + R S   FL P  D VV P P     ++ P +
Sbjct:  224 DSSSIMRCNYYPPCPEPERTLGTGPHCDPTALTILLQDDVGGLEVLVDGEWRPVSPVPGAMVINIGDTFMALSNGRYKSCLHRAVVNQRRERRSLAFFLCPREDRVVRPPPSAATPQHYPDF 345          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ACCH1_ARATH (1-aminocyclopropane-1-carboxylate oxidase homolog 1 OS=Arabidopsis thaliana GN=At1g06620 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.347e-22
Identity = 47/126 (37.30%), Postives = 77/126 (61.11%), Query Frame = -1
Query:  190 NYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEP---PADTVVGPLPQLVDDENPPKYKAKKFKDYS 558
            +YYPPCP+PDL LG+  H+D S LT+L+ + + GLQV  D  W+D   +P ALV+++GD +++++N K+ +V HR   +    R+S   F          V GP+ +++ +ENPP Y+     +Y+
Sbjct:  221 HYYPPCPQPDLTLGLTKHSDNSFLTILLQDHIGGLQVLHDQYWVDVPPVPGALVVNVGDLLQLITNDKFISVEHRVLANVAGPRISVACFFSSYLMANPRVYGPIKEILSEENPPNYRDTTITEYA 346          
The following BLAST results are available for this feature:
BLAST of CN188156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
NCS1_COPJA3.621e-2336.07S-norcoclaurine synthase 1 OS=Coptis japonica GN=N... [more]
FL3H_MALDO3.621e-2331.34Naringenin,2-oxoglutarate 3-dioxygenase OS=Malus d... [more]
ACCO1_ARATH4.730e-2332.611-aminocyclopropane-1-carboxylate oxidase OS=Arabi... [more]
GAOX3_ARATH6.177e-2333.33Gibberellin 20 oxidase 3 OS=Arabidopsis thaliana G... [more]
FL3H_MATIN1.054e-2232.00Naringenin,2-oxoglutarate 3-dioxygenase (Fragment)... [more]
FL3H_ARATH1.376e-2232.00Naringenin,2-oxoglutarate 3-dioxygenase OS=Arabido... [more]
DV4H_CATRO1.797e-2232.60Deacetoxyvindoline 4-hydroxylase OS=Catharanthus r... [more]
GAOX2_ORYSJ2.347e-2241.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. ja... [more]
GAOX2_ORYSI2.347e-2241.80Gibberellin 20 oxidase 2 OS=Oryza sativa subsp. in... [more]
ACCH1_ARATH2.347e-2237.301-aminocyclopropane-1-carboxylate oxidase homolog ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188156 ID=CN188156; Name=CN188156; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTAACATTAAGGATTATTTATTATTGCTAATACCCGCGATTACA
TTTCAGAAACAAGATCGCAACAACAAACAAGAATCGATAAACGTACAGTG
ACGAGATAAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCATA
ATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATCCT
TGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCTGA
GGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGCCA
CGACATTCTCGTCTTGTCCTTGCTAACAGTGGTTCTATGCAGCACAGCTT
TGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGACG
AGAGCGTTGGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAGAC
TTGCAGACCAGGAACTTCATTGGGAACAAGAACGGTGAGGGCAGAAAGAT
CAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCGGA
TAATAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCTTC
TTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAACA
ACTTATCCACCACCTCCCTCATGTACTTTGCGTACTCCTCATTCACCGCT
CGGTAAGAAGGAGGGTTGTTGGGCCAGAAGCGGTAGTT
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