CN188156

Overview
NameCN188156
Unique NameCN188156
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G2OX7_ARATH (Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis thaliana GN=GA2OX7 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.291e-12
Identity = 42/125 (33.60%), Postives = 65/125 (52.00%), Query Frame = -1
Query:  193 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 567
            L++N Y P        G+V HTD S LT+L  +++ GL++  + +WI  K    AL ++IGD  + LSNG Y++V HR     +  RMS   F+ P  +T +           P KY+   F++Y
Sbjct:  196 LRLNKYHPSVFGSEVFGLVPHTDTSFLTILSQDQIGGLELENNGQWISVKPCLEALTVNIGDMFQALSNGVYQSVRHRVISPANIERMSIAFFVCPYLETEIDCFGY------PKKYRRFSFREY 314          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G2OX1_PEA (Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.686e-12
Identity = 37/133 (27.82%), Postives = 69/133 (51.88%), Query Frame = -1
Query:  187 MLKINYYPPCPRPDL----ALGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDYSY 570
            + ++N+YP CP   +     +G   HTD   +++L  N   G Q+  +D  WI      ++  I++GD +++++NG++K+V HR   +    R+S   F  PP    + PLP L+      K K   +K++++
Sbjct:  175 LFRVNHYPACPELAINGENLIGFGEHTDPQIISILRSNNTSGFQISLRDGSWISVPPDHSSFFINVGDSLQVMTNGRFKSVRHRVLANGIDPRLSMIYFCGPPLSEKIAPLPSLM------KGKESLYKEFTW 301          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G2OX3_ARATH (Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis thaliana GN=GA2OX3 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.756e-12
Identity = 46/180 (25.56%), Postives = 83/180 (46.11%), Query Frame = -1
Query:  193 NNPPSYRAVNEEYAKYMREVVDK-LFTYXXXXXXXXXXXLKEAAGGDDIEYMLKINYYPPCPRPDLA--LGVVAHTDLSALTVLVPNEVPGLQV-FKDDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 720
            + P  +R   EEY K M+ +  K L              L       + +  L++N+YP      +   +G   HTD   +++L  N+  GLQ+  KD  W+D     ++  + +GD +++++NG++K+V HR   +  ++R+S   F  PP    + PL  LV  ++   Y    +  Y
Sbjct:  128 HTPAIFREAVEEYIKEMKRMSSKFLEMVEEELKIEPKEKLSRLVKVKESDSCLRMNHYPEKEETPVKEEIGFGEHTDPQLISLLRSNDTEGLQICVKDGTWVDVTPDHSSFFVLVGDTLQVMTNGRFKSVKHRVVTNTKRSRISMIYFAGPPLSEKIAPLSCLVPKQDDCLYNEFTWSQY 307          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: G2OX2_PEA (Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum GN=GA2OX2 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.906e-12
Identity = 41/141 (29.08%), Postives = 69/141 (48.94%), Query Frame = -1
Query:  193 MLKINYYPPCPR--------------PDLALGVVAHTDLSALTVLVPNEVPGLQVFKDDR-WIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQLVDDENPPKYKAKKFKDY 570
            +L+IN+YPP  +               +  +G   H+D   LT+L  N V GLQ+      WI     P+   + +GD +++L+NG++ +V HR   +  K RMS   F  PP + ++ PL ++V   +P  Y+   +  Y
Sbjct:  174 LLRINHYPPVKKLGNDNWDPSKIQNSNNNNIGFGEHSDPQILTILRSNNVGGLQISTHHGLWIPVPPDPSEFYVMVGDALQVLTNGRFVSVRHRVLTNTTKPRMSMMYFAAPPLNWLISPLSKMVTAHSPCLYRPFTWAQY 314          
BLAST of CN188156 vs. ExPASy Swiss-Prot
Match: ISP7_SCHPO (Sexual differentiation process protein isp7 OS=Schizosaccharomyces pombe GN=isp7 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 38/110 (34.55%), Postives = 60/110 (54.55%), Query Frame = -1
Query:  244 LKINYYPPCPRPDLALGVVAHTDLSALTVLVPNEVPGLQVFK--DDRWIDAKYIPNALVIHIGDQIEILSNGKYKAVLHRTTVSKDKTRMSWPVFLEPPADTVVGPLPQL 567
            +++  YP  P     LGV  HTD  ALT++  + V GL++     + ++     P AL+ ++GD + IL+N +YK+ +HR   +    R + P FL+   D VV PLP L
Sbjct:  259 IRLLRYPSSPN---RLGVQEHTDADALTLMSQDNVKGLEILDPVSNCFLSVSPAPGALIANLGDIMAILTNNRYKSSMHRVCNNSGSDRYTIPFFLQGNIDYVVAPLPGL 365          
The following BLAST results are available for this feature:
BLAST of CN188156 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
G2OX7_ARATH1.291e-1233.60Gibberellin 2-beta-dioxygenase 7 OS=Arabidopsis th... [more]
G2OX1_PEA1.686e-1227.82Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum ... [more]
G2OX3_ARATH3.756e-1225.56Gibberellin 2-beta-dioxygenase 3 OS=Arabidopsis th... [more]
G2OX2_PEA4.906e-1229.08Gibberellin 2-beta-dioxygenase 2 OS=Pisum sativum ... [more]
ISP7_SCHPO9.252e-1134.55Sexual differentiation process protein isp7 OS=Sch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J10_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188156 ID=CN188156; Name=CN188156; organism=Citrus sinensis; type=EST; length=738bp
TTTTTTTTAACATTAAGGATTATTTATTATTGCTAATACCCGCGATTACA
TTTCAGAAACAAGATCGCAACAACAAACAAGAATCGATAAACGTACAGTG
ACGAGATAAAACATGAGCGGCCAGCGGATACTGGTGTTATTTTTCTCATA
ATGAAAAATCTACTGAGGAAGTTTGTTAAGTTTACAGTAACTGTAATCCT
TGAACTTCTTGGCCTTGTACTTTGGAGGATTTTCATCGTCAACCAGCTGA
GGAAGGGGACCCACCACCGTATCCGCAGGTGGCTCCAAGAAAACTGGCCA
CGACATTCTCGTCTTGTCCTTGCTAACAGTGGTTCTATGCAGCACAGCTT
TGTACTTGCCATTGCTCAGAATCTCGATCTGGTCCCCGATGTGGATGACG
AGAGCGTTGGGGATGTACTTGGCATCGATCCAACGGTCGTCCTTAAAGAC
TTGCAGACCAGGAACTTCATTGGGAACAAGAACGGTGAGGGCAGAAAGAT
CAGTGTGGGCCACCACTCCAAGAGCAAGATCAGGACGTGGGCATGGCGGA
TAATAATTAATCTTGAGCATGTACTCAATGTCGTCTCCTCCCGCTGCTTC
TTTCAAAACACCTCCTTCGACACCCAGTCCCAACGAAAGATACGTAAACA
ACTTATCCACCACCTCCCTCATGTACTTTGCGTACTCCTCATTCACCGCT
CGGTAAGAAGGAGGGTTGTTGGGCCAGAAGCGGTAGTT
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