CN188154

Overview
NameCN188154
Unique NameCN188154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8707 contig Csv1_Contig8707:233..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_DAUCA (Pectinesterase OS=Daucus carota PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.686e-16
Identity = 46/146 (31.51%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKSQG-----FITAQSRKSSQETTGYVFLRCVITGNGGTGYI------YLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETW 678
            D+LY+H  +Q+  +C+I G+VDFIFGN+  +++ C IH +  G      +TAQ R    + TG V  +  I        +      YLGRPW  + R V   + +   I   GW  W       +  + EY+  G G+  + R TW
Sbjct:  136 DSLYVHSNRQFFINCFIAGTVDFIFGNAAVVLQDCDIHARRPGSGQKNMVTAQGRTDPNQNTGIVIQKSRIGATSDLQPVQSSFPTYLGRPWKEYSRTVVMQSSITNVINPAGWFPWDGNFALDTLYYGEYQNTGAGAATSGRVTW 281          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME3_SOLLC (Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.814e-16
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHI-----HCKSQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYI------YLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETW 678
            DTLY H ++Q+ +D Y+ G+VDFIFGN+  + + C I     + + +  +TAQ R    + TG     C I  +     +      YLGRPW    R V   +Y+D  I   GW  W      ++  + E+   GPG+  +KR  W
Sbjct:  359 DTLYAHSQRQFYRDSYVTGTVDFIFGNAAVVFQKCQIVARKPNKRQKNMVTAQGRTDPNQATGTSIQFCDIIASPDLEPVMNEYKTYLGRPWKKHSRTVVMQSYLDGHIDPSGWFEWRGDFALKTLYYGEFMNNGPGAGTSKRVKW 504          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME61_ARATH (Probable pectinesterase/pectinesterase inhibitor 61 OS=Arabidopsis thaliana GN=PME61 PE=1 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 49/146 (33.56%), Postives = 73/146 (50.00%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCV------ITGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETW 678
            D LY+H  +Q+ ++C I G+VDFIFGN+  +++ C+I+ +      +  ITAQ+RK   + TG     C       +  + G+   YLGRPW  + RVV+  + M   I   GW  W       S  + EY   G GS   +R  W
Sbjct:  402 DALYVHSNRQFFRECEIYGTVDFIFGNAAVILQSCNIYARKPMAQQKITITAQNRKDPNQNTGISIHACKLLATPDLEASKGSYPTYLGRPWKLYSRVVYMMSDMGDHIDPRGWLEWNGPFALDSLYYGEYMNKGLGSGIGQRVKW 547          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME21_SOLLC (Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2.1 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.212e-16
Identity = 45/146 (30.82%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYI------YLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETW 678
            DTLY H ++Q+ +D Y+ G++DFIFGN+  + + C +  +      Q  +TAQ R    + TG     C I  +     +      YLGRPW  + R V   +Y+   I   GW  W      ++  + E+   GPG+  +KR  W
Sbjct:  365 DTLYAHSQRQFYRDSYVTGTIDFIFGNAAVVFQKCQLVARKPGKYQQNMVTAQGRTDPNQATGTSIQFCDIIASPDLKPVVKEFPTYLGRPWKKYSRTVVMESYLGGLIDPSGWAEWHGDFALKTLYYGEFMNNGPGAGTSKRVKW 510          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME60_ARATH (Probable pectinesterase/pectinesterase inhibitor 60 OS=Arabidopsis thaliana GN=PME60 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.829e-15
Identity = 49/148 (33.11%), Postives = 71/148 (47.97%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHC----HIHCKSQ-GFITAQSRKSSQETTGYVFLRCVITGNGGTGYI------YLGRPWGPFGRVVFAFTYMDQCIRHVGWHNW--GKVENERSACFYEYRCFGPGSCPAKRETW 678
            DTL +H ++Q+ ++CYI G+VDFIFGN+  + ++C     +  K Q   ITAQ R    + TG      +I        +      Y+GRPW  + R V   TY+D  +  VGW  W  G      +  + EY+  GP S    R  W
Sbjct:  355 DTLMVHSQRQFYRECYIYGTVDFIFGNAAVVFQNCIILPRLPLKGQANVITAQGRTDLFQNTGISIHNSIIIPAPDLKPVVRSVKTYMGRPWMMYSRTVVLKTYIDSVVSPVGWSPWTKGSTYGLDTLFYAEYKNIGPASSTRWRVRW 502          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_BRANA (Probable pectinesterase/pectinesterase inhibitor OS=Brassica napus GN=BP19 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 51/168 (30.36%), Postives = 79/168 (47.02%), Query Frame = -2
Query:  214 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS-----QGFITAQ-SRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLD-EEAEQFLMHNFIDP 678
            DTLY++  +Q+ ++  + G+VDFIFG S  +I++  I C+         +TA  + K      G V   C I  +        T   YLGRPW PF       T +   I+  GW+ W   +   +A + E+   GPG+  A R  WA+      E E+F + N++ P
Sbjct:  402 DTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILCRKGSPGQTNHVTADGNEKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANTAARVPWAKMAKSAAEVERFTVANWLTP 569          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.549e-14
Identity = 50/168 (29.76%), Postives = 80/168 (47.62%), Query Frame = -2
Query:  214 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS-----QGFITAQSRKSSQETT-GYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLD-EEAEQFLMHNFIDP 678
            DTLY++  +Q+ ++  + G+VDFI G S  +I++  I C+         +TA  ++  +    G V   C I  +        T   YLGRPW PF       T +   I+  GW+ W   +   +A + E+   GPG+ PA R  WA+      E E+F + N++ P
Sbjct:  389 DTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWAKMAKSAAEVERFTVANWLTP 556          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_MEDSA (Pectinesterase/pectinesterase inhibitor OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.450e-14
Identity = 42/145 (28.97%), Postives = 68/145 (46.90%), Query Frame = -2
Query:  274 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK-----SQGFITAQSRKSSQETTGYVFLRCVITGNGGTGYI-----YLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETW 678
            DTLY+  ++Q+ +DC I G++DF+FG    + ++C + C+      Q  +TA  R+     +  VF     TG      +     YLGRPW  + +VV   + +D      G+  W     + +  +YEY   GPG+    R  W
Sbjct:  259 DTLYVQSQRQFYRDCSISGTIDFVFGERFGVFQNCKLVCRLPAKGQQCLVTAGGREKQNSASALVFQSSHFTGEPALTSVTPKVSYLGRPWKQYSKVVIMDSTIDAIFVPEGYMPWMGSAFKETCTYYEYNNKGPGADTNLRVKW 403          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME36_ARATH (Probable pectinesterase/pectinesterase inhibitor 36 OS=Arabidopsis thaliana GN=PME36 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.885e-14
Identity = 54/174 (31.03%), Postives = 79/174 (45.40%), Query Frame = -2
Query:  199 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK----SQG-FITAQSRKSSQETTGYVFLRCVITGN------GGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELL---DEEAEQFLMHNFIDPDPQRP 678
            DTL+ H  +Q+ +D +I G++DFIFG++ A+ ++C I  +     QG  ITAQ R      +G       I          G    YLGRPW  + R VF  T +D+ I   GW  W       +  + E+   G G+   +R  W    +   +EEA  F +  FI  D   P
Sbjct:  336 DTLFTHSLRQFYRDRHIYGTIDFIFGDAAAVFQNCDIFVRRPMDHQGNMITAQGRDDPHTNSGISIQHSRIRAAPEFEAVKGRFKSYLGRPWKKYSRTVFLKTDIDELIDPRGWREWSGSYALSTLYYGEFMNTGAGAGTGRRVNWPGFHVLRGEEEASPFTVSRFIQGDSWIP 509          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_ASPTU (Pectinesterase OS=Aspergillus tubingensis GN=pme1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.004e-13
Identity = 52/150 (34.67%), Postives = 67/150 (44.67%), Query Frame = -2
Query:  256 DTLYLHYEKQYLKDCYIEGSVDFIFG-NSTALIEHCHIHC---KSQGFITAQSRKSSQETTGYVFLRCVITGNGG----TGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWG-KVENERSACFYEYRCFGPGSCPAKRETWARELLD 678
            DTL      Q     YIEG+VDFIFG ++ A    C I      S   ITA  R S  + + YV  +  +    G    +G  YLGRPW  + RV F  T M   I H+GW  W     N  +  F EY   G G+    R  ++ EL +
Sbjct:  161 DTLLAETGYQVYAGTYIEGAVDFIFGQHARAWFHECDIRVLEGPSSASITANGRSSESDDSYYVIHKSTVAAADGNDVSSGTYYLGRPWSQYARVCFQKTSMTDVINHLGWTEWSTSTPNTENVTFVEYGNTGTGA-EGPRANFSSELTE 309          
The following BLAST results are available for this feature:
BLAST of CN188154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PME_DAUCA3.686e-1631.51Pectinesterase OS=Daucus carota PE=1 SV=1[more]
PME3_SOLLC4.814e-1632.19Pectinesterase 3 OS=Solanum lycopersicum GN=PME3 P... [more]
PME61_ARATH8.212e-1633.56Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME21_SOLLC8.212e-1630.82Pectinesterase 2.1 OS=Solanum lycopersicum GN=PME2... [more]
PME60_ARATH1.829e-1533.11Probable pectinesterase/pectinesterase inhibitor 6... [more]
PME_BRANA1.549e-1430.36Probable pectinesterase/pectinesterase inhibitor O... [more]
PME_BRACM1.549e-1429.76Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME_MEDSA3.450e-1428.97Pectinesterase/pectinesterase inhibitor OS=Medicag... [more]
PME36_ARATH5.885e-1431.03Probable pectinesterase/pectinesterase inhibitor 3... [more]
PME_ASPTU1.004e-1334.67Pectinesterase OS=Aspergillus tubingensis GN=pme1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188154 ID=CN188154; Name=CN188154; organism=Citrus sinensis; type=EST; length=679bp
AGTGATTAATAGAATTGTTTTTTAATCACCCATAAAATTACTATAGTAAT
AAGCACACACCATCTTTCGTCATGACACAAGTACGATTTTATTGACCTCA
ATTTCGGTCTTATTTGCTGGGAACCTCATGCTTGTCTTATTCAATTGTGA
TCTTTAAGCAGAATATGGTATCCTCAGGGCCATTCTCTGGGCAAGCCAAG
GTCTTTGAGGATCTGGGTCGATGAAATTATGCATGAGAAACTGTTCTGCC
TCTTCATCTAACAGTTCTCTAGCCCAGGTTTCGCGTTTTGCTGGGCAGCT
ACCTGGTCCAAAACACCTATACTCATAAAAGCAAGCACTCCTCTCGTTCT
CCACTTTGCCCCAGTTATGCCAGCCTACATGTCTGATACATTGATCCATA
TATGTAAATGCAAAGACCACCCTTCCGAAAGGTCCCCATGGGCGTCCAAG
ATAGATATATCCTGTCCCTCCATTCCCAGTGATCACACATCTCAAAAACA
CATAACCAGTTGTCTCCTGAGAGGATTTCCTGCTTTGTGCAGTAATAAAA
CCTTGCGACTTGCAGTGGATATGACAATGCTCTATGAGAGCAGTACTATT
CCCAAATATAAAATCCACACTTCCTTCAATATAGCAATCTTTCAGATACT
GTTTTTCATAATGCAAGTAAAGAGTATCC
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