CN188154

Overview
NameCN188154
Unique NameCN188154
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8707 contig Csv1_Contig8707:233..911. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME37_ARATH (Probable pectinesterase/pectinesterase inhibitor VGDH2 OS=Arabidopsis thaliana GN=VGDH2 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.311e-13
Identity = 48/168 (28.57%), Postives = 79/168 (47.02%), Query Frame = -2
Query:  214 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCKS-----QGFITAQ-SRKSSQETTGYVFLRCVITGNGG------TGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLD-EEAEQFLMHNFIDP 678
            DTLY++  +Q+ ++  + G+VDFIFG S  +I++  I  +        ++TA  + K +    G V   C I  +        T   YLGRPW  F   V   T +   I+  GW  W   +N ++A + E+   GPG+   +R  W +      E E + + N++ P
Sbjct:  406 DTLYVNNGRQFYRNIVVSGTVDFIFGKSATVIQNSLILVRKGSPGQSNYVTADGNEKGAAMKIGIVLHNCRIIPDKELEADKLTIKSYLGRPWKKFATTVIIGTEIGDLIKPEGWTEWQGEQNHKTAKYIEFNNRGPGAATTQRPPWVKVAKSAAEVETYTVANWVGP 573          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.814e-13
Identity = 52/168 (30.95%), Postives = 75/168 (44.64%), Query Frame = -2
Query:  214 DTLYLHYEKQYLKDCYIEGSVDFIFGNSTALIEHCHIHCK--SQGFITAQSRKSSQ----ETTGYVFLRCVI------TGNGGTGYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWGKVENERSACFYEYRCFGPGSCPAKRETWARELLD-EEAEQFLMHNFIDP 678
            DTLY++  +Q+ ++C + G+VDFIFG S  +I++  I  +  S+G     +   ++       G V   C I      T    T   YLGRPW  F   V   T M   IR  GW  W      +S  + EY   GPG+   +R  WA+      E   F   N++ P
Sbjct:  406 DTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWAKVARSAAEVNGFTAANWLGP 573          
BLAST of CN188154 vs. ExPASy Swiss-Prot
Match: PME_ASPAC (Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.110e-12
Identity = 52/148 (35.14%), Postives = 68/148 (45.95%), Query Frame = -2
Query:  262 DTLYLHYEKQYLKDCYIEGSVDFIFG-NSTALIEHCHIHC---KSQGFITAQSRKSSQETTGYVFLRCVITGNGGT----GYIYLGRPWGPFGRVVFAFTYMDQCIRHVGWHNWG-KVENERSACFYEYRCFGPGSCPAKRETWAREL 678
            DTL      Q   + YIEG+VDFIFG ++ A  ++  I      +   ITA  R S  +T+ YV  +  +    G     G  YLGRPW  + RVVF  T M   I  +GW  W     N     F EY   G GS    R ++A +L
Sbjct:  162 DTLLAQTGNQLYINSYIEGAVDFIFGQHARAWFQNVDIRVVEGPTSASITANGRSSETDTSYYVINKSTVAAKEGDDVAEGTYYLGRPWSEYARVVFQQTSMTNVINSLGWTEWSTSTPNTEYVTFGEYANTGAGS-EGTRASFAEKL 308          
The following BLAST results are available for this feature:
BLAST of CN188154 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
PME37_ARATH1.311e-1328.57Probable pectinesterase/pectinesterase inhibitor V... [more]
PME4_ARATH3.814e-1330.95Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_ASPAC1.110e-1235.14Pectinesterase OS=Aspergillus aculeatus GN=pme1 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188154 ID=CN188154; Name=CN188154; organism=Citrus sinensis; type=EST; length=679bp
AGTGATTAATAGAATTGTTTTTTAATCACCCATAAAATTACTATAGTAAT
AAGCACACACCATCTTTCGTCATGACACAAGTACGATTTTATTGACCTCA
ATTTCGGTCTTATTTGCTGGGAACCTCATGCTTGTCTTATTCAATTGTGA
TCTTTAAGCAGAATATGGTATCCTCAGGGCCATTCTCTGGGCAAGCCAAG
GTCTTTGAGGATCTGGGTCGATGAAATTATGCATGAGAAACTGTTCTGCC
TCTTCATCTAACAGTTCTCTAGCCCAGGTTTCGCGTTTTGCTGGGCAGCT
ACCTGGTCCAAAACACCTATACTCATAAAAGCAAGCACTCCTCTCGTTCT
CCACTTTGCCCCAGTTATGCCAGCCTACATGTCTGATACATTGATCCATA
TATGTAAATGCAAAGACCACCCTTCCGAAAGGTCCCCATGGGCGTCCAAG
ATAGATATATCCTGTCCCTCCATTCCCAGTGATCACACATCTCAAAAACA
CATAACCAGTTGTCTCCTGAGAGGATTTCCTGCTTTGTGCAGTAATAAAA
CCTTGCGACTTGCAGTGGATATGACAATGCTCTATGAGAGCAGTACTATT
CCCAAATATAAAATCCACACTTCCTTCAATATAGCAATCTTTCAGATACT
GTTTTTCATAATGCAAGTAAAGAGTATCC
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