CN188152

Overview
NameCN188152
Unique NameCN188152
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length701
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1525 contig Csv1_Contig1525:10..710. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11A_YEAST (60S ribosomal protein L11-A OS=Saccharomyces cerevisiae GN=RPL11A PE=1 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 1.856e-58
Identity = 113/171 (66.08%), Postives = 132/171 (77.19%), Query Frame = 2
Query:   86 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 598
            K  NPMR++K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGI EHIDLGIKYDPS GI+GMDF+VV+                    H+ TKED + WF+ KY+  +L+K
Sbjct:    4 KAQNPMRDLKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRDRNFSATGNFGFGIDEHIDLGIKYDPSIGIFGMDFYVVMNRPGARVTRRKRCKGTVGNSHKTTKEDTVSWFKQKYDADVLDK 174          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_DICDI (60S ribosomal protein L11 OS=Dictyostelium discoideum GN=rpl11 PE=2 SV=2)

HSP 1 Score: 223.787 bits (569), Expect = 7.051e-58
Identity = 109/171 (63.74%), Postives = 131/171 (76.61%), Query Frame = 2
Query:   80 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 592
            + K  N MR ++++KLVLNI VGESGDRL RAAKVLEQL+GQTPV+SKARYTVRSF IRRNE+IA +VTVRG+KA ++LE GLKV+E+EL  RNFS  G FGFGIQEHIDLGIKYDPS GIYGMDFFVVL                   QH++ KEDA+ WF+  Y+G+++
Sbjct:   28 KSKKDNVMRGLRIEKLVLNICVGESGDRLVRAAKVLEQLTGQTPVYSKARYTVRSFNIRRNEQIAAHVTVRGEKAAEILEKGLKVREFELRARNFSTQGSFGFGIQEHIDLGIKYDPSIGIYGMDFFVVLSRPGFRVAHKKRAGAKVGFQHKIGKEDAVNWFKTTYDGIVI 198          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_LEICH (60S ribosomal protein L11 OS=Leishmania chagasi GN=RPL11 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.052e-57
Identity = 114/173 (65.90%), Postives = 130/173 (75.14%), Query Frame = 2
Query:   71 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 589
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NFSDTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                    H VTKE+AMKWF+  ++G+I
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFSDTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_CANGA (60S ribosomal protein L11 OS=Candida glabrata GN=RPL11 PE=3 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.052e-57
Identity = 111/171 (64.91%), Postives = 132/171 (77.19%), Query Frame = 2
Query:   86 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 598
            K  N MRE+K++KLVLNISVGESGDRLTRA+KVLEQLSGQTPV SKARYTVR+FGIRRNEKIA +VTVRG KA ++LE GLKVKEY+L  RNFS TG FGFGIQEHIDLGIKYDPS GI+GMDF++V+                    H+ +KED + WF+ +Y+  +L+K
Sbjct:    4 KTQNVMRELKIEKLVLNISVGESGDRLTRASKVLEQLSGQTPVQSKARYTVRTFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYQLRNRNFSTTGNFGFGIQEHIDLGIKYDPSIGIFGMDFYIVMGRPGNRIARRKRCRATVGNSHKTSKEDTIAWFKQRYDADVLDK 174          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_SPOFR (60S ribosomal protein L11 OS=Spodoptera frugiperda GN=RpL11 PE=2 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 117/171 (68.42%), Postives = 130/171 (76.02%), Query Frame = 2
Query:   95 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRV-TKEDAMKWFQVKYEGVILNKSQ 604
            N MR + ++KL LNI VGESGDRLTRAAKVLEQL+GQ PVFSKARYTVRSFGIRRNEKIA + TVRG KA ++LE GLKV+EYEL R NFS TG FGFGIQEHIDLGIKYDPS GIYG+DF+VVL                  I   V TKEDAMKWFQ KY+G+ILN  +
Sbjct:   25 NVMRNLHIRKLCLNICVGESGDRLTRAAKVLEQLTGQQPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILERGLKVREYELRRDNFSATGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGPTRIQCTTQKTQDWQGWIPPIVLTKEDAMKWFQQKYDGIILNSKK 195          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_LEIMA (60S ribosomal protein L11 OS=Leishmania major GN=RPL11 PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.571e-57
Identity = 113/173 (65.32%), Postives = 130/173 (75.14%), Query Frame = 2
Query:   71 MASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVI 589
            M +E K +NPMREI V+KL +NI VGESGDRLTRA+KVLEQL  QTPV S+AR TVR+FGIRRNEKIA + TVRG KA +LLE GLKVKE+EL   NF+DTG FGFGI EHIDLGIKYDPSTGIYGMDF+VVL                    H VTKE+AMKWF+  ++G+I
Sbjct:    1 MVAESKAANPMREIVVKKLCINICVGESGDRLTRASKVLEQLCEQTPVLSRARLTVRTFGIRRNEKIAVHCTVRGKKAEELLEKGLKVKEFELKSYNFADTGSFGFGIDEHIDLGIKYDPSTGIYGMDFYVVLGRRGERVAHRKRKCSRVGHSHHVTKEEAMKWFEKVHDGII 173          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_TETTH (60S ribosomal protein L11 OS=Tetrahymena thermophila GN=RPL11 PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.004e-53
Identity = 100/166 (60.24%), Postives = 126/166 (75.90%), Query Frame = 2
Query:   86 KLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEG 583
            K  N MRE+K+ KLV+N  VGESGD+LT+AAKVL+ LSGQ PVFS+ARYT+RSFGI+RNEK+A +VT+RGDKA  +L  GLKVKE EL ++NFS+TG FGFGIQEHIDLG+KYDPSTGI+GMDF+VVLE                     ++KE+ + WF+ ++EG
Sbjct:    4 KKENKMREVKIAKLVINCCVGESGDKLTKAAKVLKDLSGQEPVFSRARYTIRSFGIKRNEKMAVHVTIRGDKARDILTRGLKVKEMELRKKNFSNTGNFGFGIQEHIDLGMKYDPSTGIFGMDFYVVLERPGTRVARRRRATSRVGNNQMISKEECINWFKTEFEG 169          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_ENCCU (60S ribosomal protein L11 OS=Encephalitozoon cuniculi GN=RPL11 PE=1 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.379e-45
Identity = 93/164 (56.71%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  101 MREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVIL 592
            MREI ++KL ++I   ESG +L RAAKVLEQL+GQ PV SKAR T+R+FGIRRNEKIA +V V G KA +LL + L+VKEYEL    FS+ GCFGFGI+EHIDLG+KYDP+ GI+GMDFFV+L                   + RV  EDA KWF   +EGV++
Sbjct:    1 MREISIKKLSIHICARESGAKLDRAAKVLEQLTGQKPVTSKARMTIRNFGIRRNEKIAVHVNVSGKKAYELLNTALRVKEYELKESCFSNNGCFGFGIEEHIDLGLKYDPNIGIFGMDFFVILARPGDRVSKRKRCKSRVGNKQRVYAEDAKKWFVENFEGVLV 164          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL11_TOXCA (60S ribosomal protein L11 (Fragment) OS=Toxocara canis GN=RPL11 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.525e-44
Identity = 90/114 (78.95%), Postives = 99/114 (86.84%), Query Frame = 2
Query:   80 EKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIK 421
            EKK  N MRE+K+QKL LNI VGE GDRLTRAAKVLEQL+GQTPVFSKARYTVR+FGIRRNEKIA + TVRG KA ++LE GLKVKEYEL + NFSDTG FG G+QEHIDLGIK
Sbjct:   12 EKKARNVMRELKIQKLCLNICVGEFGDRLTRAAKVLEQLTGQTPVFSKARYTVRTFGIRRNEKIAVHCTVRGPKAEEILEKGLKVKEYELYKENFSDTGNFGLGVQEHIDLGIK 125          
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_ARCFU (50S ribosomal protein L5P OS=Archaeoglobus fulgidus GN=rpl5p PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.089e-32
Identity = 73/171 (42.69%), Postives = 102/171 (59.65%), Query Frame = 2
Query:   59 QQTRMASEKKLSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 568
            Q   M  +    NPMRE+ + K+V+NI VGESG+R  +A  +LE+L  Q P  + A+ T+++FGIR+ E I   VT+RG+KA++ L+  L VKE  L R++  + G F FGI EHIDL G+ YDP  GI+GMD  V L+                   HRVTKED ++W +
Sbjct:    2 QAVEMEKKAGNENPMREVVLDKVVINIGVGESGERHKKAYSLLEELVEQKPAITYAKMTIKNFGIRKGEAIGIKVTLRGEKALKFLKDALTVKENRLSRKSIGE-GYFAFGIAEHIDLPGVDYDPDVGIFGMDVCVSLKRRGYRVARRRRKKAKIATSHRVTKEDTIRWLE 171          
The following BLAST results are available for this feature:
BLAST of CN188152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 85
Match NameE-valueIdentityDescription
RL11A_YEAST1.856e-5866.0860S ribosomal protein L11-A OS=Saccharomyces cerev... [more]
RL11_DICDI7.051e-5863.7460S ribosomal protein L11 OS=Dictyostelium discoid... [more]
RL11_LEICH2.052e-5765.9060S ribosomal protein L11 OS=Leishmania chagasi GN... [more]
RL11_CANGA2.052e-5764.9160S ribosomal protein L11 OS=Candida glabrata GN=R... [more]
RL11_SPOFR4.571e-5768.4260S ribosomal protein L11 OS=Spodoptera frugiperda... [more]
RL11_LEIMA4.571e-5765.3260S ribosomal protein L11 OS=Leishmania major GN=R... [more]
RL11_TETTH4.004e-5360.2460S ribosomal protein L11 OS=Tetrahymena thermophi... [more]
RL11_ENCCU1.379e-4556.7160S ribosomal protein L11 OS=Encephalitozoon cunic... [more]
RL11_TOXCA1.525e-4478.9560S ribosomal protein L11 (Fragment) OS=Toxocara c... [more]
RL5_ARCFU5.089e-3242.6950S ribosomal protein L5P OS=Archaeoglobus fulgidu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188152 ID=CN188152; Name=CN188152; organism=Citrus sinensis; type=EST; length=701bp
GCAGTGTTTGTTCCGTCTCCGTCTTCGTCTTCACTGAGCAGCGGCAGTAA
CTCATCATCAGCAAACCCGAATGGCTTCAGAGAAGAAACTTTCGAACCCC
ATGAGGGAAATTAAGGTTCAGAAGCTTGTGCTCAACATCTCCGTTGGTGA
AAGTGGAGATCGTCTCACCAGAGCCGCTAAGGTGCTGGAGCAACTCAGTG
GACAGACACCTGTTTTCTCCAAGGCCAGGTACACTGTTCGGTCTTTTGGG
ATCAGACGTAATGAGAAGATTGCATGCTATGTGACTGTTAGAGGTGACAA
GGCAATGCAGCTTTTGGAGAGTGGATTGAAGGTGAAGGAATATGAGCTTC
TGCGTCGAAATTTCAGTGACACTGGCTGTTTTGGCTTTGGTATTCAAGAG
CATATTGATCTTGGAATCAAGTATGATCCTTCCACTGGAATTTATGGTAT
GGATTTCTTTGTGGTTCTGGAGCGCCCGGGTTATCGTGTAGGTCGCCGCC
GTAGGTGCAAGTCTCGTGTTGGGATTCAGCACCGTGTCACGAAGGAAGAT
GCAATGAAATGGTTCCAGGTCAAATACGAAGGTGTGATCCTCAACAAGTC
CCAGAATATTGGTGCTTAAGCCCTTTGTGTGATGACGATTTTGCATTTAT
AGTGTTGATGTTTGTAGACACTGGCTATTACTTGGCGTTTTGCAAACTTG
A
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