CN188152
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METTH (50S ribosomal protein L5P OS=Methanobacterium thermoautotrophicum GN=rpl5p PE=3 SV=1) HSP 1 Score: 122.865 bits (307), Expect = 1.694e-27 Identity = 63/163 (38.65%), Postives = 100/163 (61.35%), Query Frame = 2 Query: 95 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYE 580 NPM E+++ K+ LNI VGE G++L RA ++LE++SGQ PV + ++ T FGIR+ + IAC VT+RG++A ++L+ L+ L F + G GI EHID+ G+KYDP GI+GM+ V E +HRV++E+A+++ + K++ Sbjct: 2 NPMEEVRIFKVTLNIGVGEGGEKLARAERLLEEMSGQKPVRTHSKVTNPEFGIRKKQPIACKVTLRGERAEKVLKMFLEGIGNRLKASQFDEYGNVSMGIDEHIDIPGMKYDPEIGIFGMNLSVTFEKPGHRINRRRIQRRKVPQKHRVSREEAIEFMKEKFQ 164
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METHJ (50S ribosomal protein L5P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl5p PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 4.929e-27 Identity = 62/162 (38.27%), Postives = 97/162 (59.88%), Query Frame = 2 Query: 95 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577 NP R + V K+V+++ VGE+GD+L A +++ +++G TPV S A+ T+ +FGIR+ I+C VT+RG+ A + LE+ +K+ E ++ R F G F FGI+EH D G YDP GI+G+D VVL+ ++ VT EDA + + +Y Sbjct: 2 NPNRSVAVDKVVVHMGVGEAGDKLVNAERIISEITGNTPVRSVAKQTLPAFGIRKGAPISCRVTLRGEAAEKFLETSIKIVENKINSRAFDKQGNFSFGIEEHTDYPGQSYDPKVGIFGLDVTVVLKRNGVRIARRHIQQKKLPLKQLVTVEDAKLFLKDRY 163
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METM7 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl5p PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 8.407e-27 Identity = 68/171 (39.77%), Postives = 98/171 (57.31%), Query Frame = 2 Query: 98 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 598 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG A + L S K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFSAFKTCGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDICVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQAKFDTEVVRE 181
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METM6 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl5p PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.098e-26 Identity = 67/171 (39.18%), Postives = 98/171 (57.31%), Query Frame = 2 Query: 98 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 598 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T +FGIR+ I VT+RG A + L + K L +F G F FG+ EHID G KYDPS GIYGMD V E +H VTK++A+++ Q K++ ++ + Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLGNAFTAFKTSGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSIGIYGMDVCVTFEKSGYRVKSRKVKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METVS (50S ribosomal protein L5P OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=rpl5p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26 Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 2 Query: 98 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577 PM++ ++QK+ +N VGE+GDRLT AKV+E L+GQ PV + A+ T +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METVA (50S ribosomal protein L5P OS=Methanococcus vannielii GN=rpl5p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26 Identity = 67/164 (40.85%), Postives = 93/164 (56.71%), Query Frame = 2 Query: 98 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLES---GLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577 PM++ ++QK+ +N VGE+GDRLT AKV+E L+GQ PV + A+ T +FGIR+ I VT+RG A + LE+ KV L +F G F FG+ EHID G KYDP+ GIYGMD V E +H V KE+A+++ + K+ Sbjct: 11 PMKKPRIQKVTVNFGVGEAGDRLTIGAKVIETLTGQAPVRTLAKQTNPAFGIRKKLPIGLKVTLRGKNAEEFLENAFVAFKVSGKVLYASSFDKVGNFSFGVPEHIDFPGQKYDPTVGIYGMDICVTFEKPGYRVKSRKLKRSHIPAKHLVKKEEAIEYIEKKF 174
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METM5 (50S ribosomal protein L5P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl5p PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 3.195e-26 Identity = 65/171 (38.01%), Postives = 99/171 (57.89%), Query Frame = 2 Query: 98 PMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLE---SGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKYEGVILNK 598 PM++ ++QK+ +N VGE+GDRLT AKV+E+L+GQ+PV + A+ T ++GIR+ I VT+RG A + L+ + K L +F G F FG+ EHID G KYDPS GIYGMD V + +H VTK++A+++ Q K++ ++ + Sbjct: 11 PMKKPRIQKITVNFGVGEAGDRLTIGAKVIEELTGQSPVRTLAKQTNPAYGIRKKLPIGLKVTLRGKNAEEFLKNAFTAFKACGKVLYASSFDQVGNFSFGVPEHIDFPGQKYDPSVGIYGMDVCVTFDKAGYRVKSRKLKRSHIPKKHLVTKDEAIEYIQTKFDTEVVRE 181
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METMA (50S ribosomal protein L5P OS=Methanosarcina mazei GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26 Identity = 61/164 (37.20%), Postives = 94/164 (57.32%), Query Frame = 2 Query: 89 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577 +SNPMR V+K+++++ VGESG L A ++L+ ++GQ V A+ T+ +F I++NE I C VT+RG +A + L + ++ E L R F G FGI+EH D G++YDP+ G++GMD VVL+ HRVT +DA+ + Y Sbjct: 1 MSNPMRTPMVEKVIVHMGVGESGQHLVNAEEILKTITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQEFLGTSFEIIEKTLSRAQFDSLGNVSFGIEEHTDFPGMRYDPNIGVFGMDVTVVLKRPGERICKRRIATRKIPTDHRVTVDDAIAFLNESY 164
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METBF (50S ribosomal protein L5P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl5p PE=3 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 5.449e-26 Identity = 62/164 (37.80%), Postives = 94/164 (57.32%), Query Frame = 2 Query: 89 LSNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQVKY 577 +SN MR V+K+++++ VGESG L A ++L ++GQ V A+ T+ +F I++NE I C VT+RG +A Q LE+ L + + L+R F G FGI+EH D G+KYDP+ G++GMD VV++ HRVT ED++ + Y Sbjct: 1 MSNVMRTPVVEKVIVHMGVGESGQHLVDAEEILRNITGQEVVRCFAKRTLPAFSIKKNEPIGCKVTLRGQRAQQFLETALGIVDKTLVRSQFDSLGNVSFGIEEHTDFPGMKYDPNIGVFGMDVTVVIKRPGERICKRRIATRKIPTNHRVTLEDSIAFLNDSY 164
BLAST of CN188152 vs. ExPASy Swiss-Prot
Match: RL5_METS3 (50S ribosomal protein L5P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rpl5p PE=3 SV=1) HSP 1 Score: 116.701 bits (291), Expect = 1.214e-25 Identity = 60/159 (37.74%), Postives = 95/159 (59.75%), Query Frame = 2 Query: 95 NPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDL-GIKYDPSTGIYGMDFFVVLEXXXXXXXXXXXXXXXXXIQHRVTKEDAMKWFQ 568 NPM E+++ K ++I VGE+G++L+RA +LEQ+ QTPV + ++ T FGIR+ + IAC +T+RG+KA + +E L+ + F G FGI+EHID+ G+KY+P GI+GM+ V E +HR++KE+ MK+ + Sbjct: 2 NPMNEVQISKATVSIGVGEAGEKLSRAITLLEQMFDQTPVKTFSKVTNPEFGIRKRQPIACKLTLRGEKADKAIEMVLEGINKNIKPTQFDAQGNLSFGIKEHIDIPGMKYNPDIGIFGMNVSVTFEKPGYRIAKRRIQQKKVPAKHRISKEETMKYME 160 The following BLAST results are available for this feature:
BLAST of CN188152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 85
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188152 ID=CN188152; Name=CN188152; organism=Citrus sinensis; type=EST; length=701bpback to top |