CN188150

Overview
NameCN188150
Unique NameCN188150
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length655
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188150_ssr107 microsatellite CN188150_ssr107:107..118. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13552 contig Csv1_Contig13552:28..682. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_PONAB (Protein yippee-like 5 OS=Pongo abelii GN=YPEL5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_MOUSE (Protein yippee-like 5 OS=Mus musculus GN=Ypel5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_MACFA (Protein yippee-like 5 OS=Macaca fascicularis GN=YPEL5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_HUMAN (Protein yippee-like 5 OS=Homo sapiens GN=YPEL5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_CERAE (Protein yippee-like 5 OS=Cercopithecus aethiops GN=YPEL5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPEL5_BOVIN (Protein yippee-like 5 OS=Bos taurus GN=YPEL5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.240e-14
Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = -1 
Query:  230 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEK 451
            ++S  F G  GRA+LF  VVN+     ++R++++G H V D+ C +C   LGW YE A E+SQ+YKEG  ILE+
Sbjct:   30 LISTRFTGATGRAFLFNKVVNLQYSEVQDRVMLTGRHMVRDVSCKNCNSKLGWIYEFATEDSQRYKEGRVILER 103
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: YPL2_CAEEL (Protein yippee-like B0546.4 OS=Caenorhabditis elegans GN=B0546.4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.365e-12
Identity = 36/79 (45.57%), Postives = 45/79 (56.96%), Query Frame = -1 
Query:  215 IVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK 451
            + SKAF G  G A LF+   NV  G  E R + +G H+V D++C +C Q LGW YE A  ESQ YKE   I+E     K
Sbjct:   31 LTSKAFTGSTGPATLFKRAWNVVYGRCEHRKMTTGWHTVRDVFCVTCNQKLGWMYEMAVSESQTYKETQVIIENANFEK 109
[Close]
BLAST of CN188150 vs. ExPASy Swiss-Prot
Match: MOH1_YEAST (Protein yippee-like MOH1 OS=Saccharomyces cerevisiae GN=MOH1 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.189e-12
Identity = 34/84 (40.48%), Postives = 55/84 (65.48%), Query Frame = -1 
Query:  215 ASPDHIVSKAFQGRFGRAYLFRSVVNVSLGPREERLLVSGLHSVNDIYCSSCQQLLGWRYEKAYEESQKYKEGMYILEKERMLK 466
            +S   I+S+ ++GR G AYL   VVNV  G  E+R +++G + V DI C  C++ +GW+Y ++  + Q+YKEG +ILE + + K
Sbjct:   53 SSSFQIISRDYRGRTGTAYLMNKVVNVVEGKVEQRRMLTGDYLVCDILCHWCKRNVGWKYLQSSNDDQQYKEGKFILELKNICK 136
The following BLAST results are available for this feature:
BLAST of CN188150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 38
Match NameE-valueIdentityDescription
YPEL5_PONAB7.240e-1445.95Protein yippee-like 5 OS=Pongo abelii GN=YPEL5 PE=... [more]
YPEL5_MOUSE7.240e-1445.95Protein yippee-like 5 OS=Mus musculus GN=Ypel5 PE=... [more]
YPEL5_MACFA7.240e-1445.95Protein yippee-like 5 OS=Macaca fascicularis GN=YP... [more]
YPEL5_HUMAN7.240e-1445.95Protein yippee-like 5 OS=Homo sapiens GN=YPEL5 PE=... [more]
YPEL5_CERAE7.240e-1445.95Protein yippee-like 5 OS=Cercopithecus aethiops GN... [more]
YPEL5_BOVIN7.240e-1445.95Protein yippee-like 5 OS=Bos taurus GN=YPEL5 PE=2 ... [more]
YPL2_CAEEL1.365e-1245.57Protein yippee-like B0546.4 OS=Caenorhabditis eleg... [more]
MOH1_YEAST5.189e-1240.48Protein yippee-like MOH1 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188150 ID=CN188150; Name=CN188150; organism=Citrus sinensis; type=EST; length=655bp
TTTTTTTTTTTTTTTTTAATCTAAAGTTATTTTCATTAAATCAAACCTTT
TGCAGCTGCGAACATGCCAGCCTACAATGTCTACTAACACGATGAGATCA
GATCAATTCTTTCTTTCTTTCCTTAAAAGAGAGAAAAAATGTTCAGCTAC
AAAAAGATTGGCTTCTTCCAATATGTTTTATATGTATCCATATAACATGA
CATCACCAACCTGCCTTCAGCATTCGTTCCTTTTCCAGAATGTACATCCC
TTCTTTATACTTCTGGCTCTCTTCATATGCCTTCTCATATCTCCAGCCGA
GTAACTGCTGACAGGAGCTGCAATAAATGTCATTCACGGAATGCAACCCA
CTGACAAGAAGCCGCTCTTCTCTAGGCCCAAGAGACACATTTACCACAGA
TCGGAAAAGATAAGCACGGCCAAAACGGCCTTGAAAAGCCTTGGAAACGA
TGTGATCGGGAGATGCCGAGTCGACTTTGCAACTCTTGCACTTGAAGATC
CTTTTTTTTTTTTTTTTTTTTTTGAACCAACCGAAGTGTATCACTCCAAT
TGCATATGAAAAAGAAGTCCCTTTCATTTGATTCGAACAAAATTACAACA
CCATGTAAACTTTATTTTGCTATTACATGAGGAAATTATCAAGAGGCTGA
GTAAC
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