CN188149

Overview
NameCN188149
Unique NameCN188149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.986e-59
Identity = 107/219 (48.86%), Postives = 149/219 (68.04%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M  +K H+N+ VIGH+D GKSTT G L+++ G +   +IE F KEA    K SF++AWV+D LK ERERGITIDIA  +F+T ++Y TV+D PGHRDF+KNMITG SQAD A+L++ +  G  E       QT+EH  LA TLG+ Q++   NKMDA    Y + R++E+ KE++  +  VGY   ++ F+P+S F+G N+ ++S    WY GPTLL+A
Sbjct:    1 MANDKPHMNLAVIGHIDHGKSTTVGRLMFETGAVPAHIIENFRKEAESKGKGSFEFAWVMDNLKEERERGITIDIAHKRFDTAKFYFTVVDCPGHRDFVKNMITGASQADAAILVVAAPDGVME-------QTKEHVFLARTLGITQLVIAINKMDAV--NYDQKRFEEVKKELTQLIGMVGYKAAEILFIPMSSFKGVNISKKSPETPWYTGPTLLEA 210          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_THESM (Elongation factor 1-alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=tuf PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.174e-58
Identity = 117/219 (53.42%), Postives = 153/219 (69.86%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M KEK H+NIV IGHVD GKSTT G L++    I +++I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVLI+ +T G          QT+EHA LA TLG+  +I   NKMDA   KY + R+ E+  +V+  L+ +GY  +  P +PIS +EGDN++++S  + WY GPTL++A
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLIVAATDGVMP-------QTKEHAFLARTLGINHIIVGVNKMDAV--KYDEKRFKEVATQVTKLLQMLGY--KNFPVIPISAWEGDNVVKKSDKMPWYNGPTLIEA 206          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 226.098 bits (575), Expect = 1.533e-58
Identity = 115/219 (52.51%), Postives = 154/219 (70.32%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M K+K H+NIV IGHVD GKSTT G L+Y  G I +++I++FE E  E  K SFK+AWV+D+L+ ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+K +I   NKMD     Y++ R++E+  +V   LK +GY  +  P +PIS +EG+N++++S  + WY GPTL++A
Sbjct:    3 MPKDKPHVNIVFIGHVDHGKSTTIGRLLYDTGNIPEQIIKKFE-EMGEKGK-SFKFAWVMDRLREERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGIKHIIVAINKMDMV--NYNQKRFEEVKAQVEKLLKMLGY--KDFPVIPISAWEGENVVKKSDKMPWYNGPTLIEA 208          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_UNCMA (Elongation factor 1-alpha OS=Uncultured methanogenic archaeon RC-I GN=tuf PE=3 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.415e-58
Identity = 105/219 (47.95%), Postives = 149/219 (68.04%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M   K HIN+ VIGH+D GKST  G L+++ G +   +IE+++KEA    K +F++AWV+D LK ERERGITIDIA  +F+T +YY TV+D PGHRDF+KNMITG SQAD A+L+  +  G  +       QT+EH  L+ TLG+ Q+I   NKMDA    Y + RY+E+ +EVS  L+ +G+ P+++PF+P S F+G N+ + +    WY G T+L+A
Sbjct:    1 MAATKPHINLAVIGHIDHGKSTLVGRLLFETGAVPAHIIEQYKKEAESKGKGTFEFAWVMDSLKEERERGITIDIAHRRFDTEKYYFTVVDCPGHRDFVKNMITGASQADAAILVCAAPDGVMQ-------QTKEHIFLSKTLGINQLIIAVNKMDAI--NYDQKRYNEVKEEVSKILRMIGFKPDQIPFIPTSAFKGTNIAKHAEETPWYTGVTILEA 210          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: HBS1L_PONAB (HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 1.695e-57
Identity = 108/217 (49.77%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLD 731
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLITRSRSSELTKWYKGLCLLE 472          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: HBS1L_RAT (HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 107/217 (49.31%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLD 731
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+
Sbjct:  253 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVVTLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTSRSQSSDLTKWYKGLCLLE 467          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: HBS1L_MOUSE (HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV=2)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 107/217 (49.31%), Postives = 148/217 (68.20%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLD 731
            K  +N+VVIGHVD+GKST  GH++Y LG ++KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+  RS + D   WYKG  LL+
Sbjct:  256 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVAFIPTSGLSGENLTARSQSSDLTTWYKGMCLLE 470          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: HBS1L_HUMAN (HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.213e-57
Identity = 108/217 (49.77%), Postives = 149/217 (68.66%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLD---WYKGPTLLD 731
            K  +N+VVIGHVD+GKST  GH++Y LG I+KR + ++E+E+ +  K SF YAWVLD+   ERERG+T+D+ + KFETT    T++DAPGH+DFI NMITG +QAD AVL++D++ G FEAG    GQTREH LL  +LGV Q+    NKMD     + + R+ EI  ++  +LK+ G+    V F+P SG  G+N+I RS + +   WYKG  LL+
Sbjct:  258 KQLLNLVVIGHVDAGKSTLMGHMLYLLGNINKRTMHKYEQESKKAGKASFAYAWVLDETGEERERGVTMDVGMTKFETTTKVITLMDAPGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFETGGQTREHGLLVRSLGVTQLAVAVNKMDQV--NWQQERFQEITGKLGHFLKQAGFKESDVGFIPTSGLSGENLITRSQSSELTKWYKGLCLLE 472          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 221.861 bits (564), Expect = 2.891e-57
Identity = 113/219 (51.60%), Postives = 150/219 (68.49%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M KEK H+NIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y + ++ ++ ++V   L+ +GY  +  P +PIS +EGDN++++S  + WY GPTLL+A
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMV--NYDEKKFKQVAEQVKKLLQMLGY--KDFPIIPISAWEGDNVVKKSDKMPWYNGPTLLEA 206          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 3.775e-57
Identity = 114/219 (52.05%), Postives = 150/219 (68.49%), Query Frame = 3
Query:   78 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERSTNLDWYKGPTLLDA 734
            M KEK H+NIV IGHVD GKSTT G L++    I + +I++FE E  E  K SFK+AWV+D+LK ERERGITID+A  KFET   Y T+IDAPGHRDF+KNMITG SQAD AVL++ +T G          QT+EHA LA TLG+  +I   NKMD     Y +  ++++  +V   LK +GY  +  P +PIS +EGDN++++S  + WYKGPTL++A
Sbjct:    1 MAKEKPHVNIVFIGHVDHGKSTTIGRLLFDTANIPENIIKKFE-EMGEKGK-SFKFAWVMDRLKEERERGITIDVAHTKFETPHRYITIIDAPGHRDFVKNMITGASQADAAVLVVAATDGVMP-------QTKEHAFLARTLGINHIIVAINKMDMV--NYDQKVFEKVKAQVEKLLKMLGY--KDFPVIPISAWEGDNVVKKSDKMPWYKGPTLIEA 206          
The following BLAST results are available for this feature:
BLAST of CN188149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EF1A_METPE8.986e-5948.86Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_THESM1.174e-5853.42Elongation factor 1-alpha OS=Thermococcus sibiricu... [more]
EF1A_PYRWO1.533e-5852.51Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]
EF1A_UNCMA3.415e-5847.95Elongation factor 1-alpha OS=Uncultured methanogen... [more]
HBS1L_PONAB1.695e-5749.77HBS1-like protein OS=Pongo abelii GN=HBS1L PE=2 SV... [more]
HBS1L_RAT2.213e-5749.31HBS1-like protein OS=Rattus norvegicus GN=Hbs1l PE... [more]
HBS1L_MOUSE2.213e-5749.31HBS1-like protein OS=Mus musculus GN=Hbs1l PE=1 SV... [more]
HBS1L_HUMAN2.213e-5749.77HBS1-like protein OS=Homo sapiens GN=HBS1L PE=1 SV... [more]
EF1A_PYRKO2.891e-5751.60Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_THEGJ3.775e-5752.05Elongation factor 1-alpha OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188149 ID=CN188149; Name=CN188149; organism=Citrus sinensis; type=EST; length=734bp
CTCAATTTCCCAATGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGAT
GCTCCTGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAAGGTCCAACCCTGCTGGATGCT
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