CN188149

Overview
NameCN188149
Unique NameCN188149
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length734
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_EIMTE (Elongation factor Tu, apicoplast OS=Eimeria tenella GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 70/211 (33.18%), Postives = 100/211 (47.39%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISGFEGDNMIERS-TNLDWYK 713
            K KTH+NI  IGHVD GK+T T  +   L  I+    + + +               +D    E+ RGITI+ +  ++ET   +   ID PGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  +I   NK+D           + +  EV   L    YN +    +  S  +    IE++  N  W K
Sbjct:    8 KTKTHLNIGTIGHVDHGKTTLTAAITSYLSKINNTKAKSYSE---------------IDSAPEEKARGITINTSHIEYETNLRHYAHIDCPGHADYIKNMITGAAQMDGAILVVSATDGPMP-------QTREHLLLAKQVGVPNIIVFLNKIDMVE---DNELLELVELEVRELLDIYEYNGDSTSIIKGSALKALEYIEKNDLNNKWVK 193          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_CYAPA (Elongation factor Tu, cyanelle OS=Cyanophora paradoxa GN=tufA PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 65/188 (34.57%), Postives = 96/188 (51.06%), Query Frame = 3
Query:   90 KTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 650
            K H+NI  IGHVD GK+T T  +   L    K    ++++               +D    E+ RGITI+ A  ++ET + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  M+   NK D    +   A   E+V+ EV   L K  +  +++PFV
Sbjct:   10 KPHVNIGTIGHVDHGKTTLTAAITTALASQGKGKARKYDE---------------IDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPNMVVFLNKED----QIDDADLLELVELEVRELLSKYDFPGDQIPFV 171          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_CYAP4 (Elongation factor Tu OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=tuf PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 59/193 (30.57%), Postives = 98/193 (50.78%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG 662
            + K H+NI  IGHVD GK+T T  +   L  + +    ++++               +D    E+ RGITI+ A  ++ETT+ +   +D PGH D++KNMITG +Q D A+L++ +T G          QT+EH LLA  +GV  ++   NK+D       +   + +  E+   L    ++ + +P +  SG
Sbjct:    8 RNKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAAARKYDE---------------IDAAPEEKARGITINTAHVEYETTQRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGAMP-------QTKEHILLAKQVGVPSIVVFLNKVDQLD---DEELLELVELELRELLTSYDFDGDNIPIIRGSG 175          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_CYACA (Elongation factor Tu, chloroplastic OS=Cyanidium caldarium GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 65/190 (34.21%), Postives = 97/190 (51.05%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRV-IERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 650
            + K HINI  IGHVD GK+T T  +   L  ID  V +++F++               +D    E+ RGITI+ +  +++T   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK D       +   + +  EV   L K  +  E+VPFV
Sbjct:    8 RSKPHINIGTIGHVDHGKTTLTAAISAVLASIDNTVKLKKFDE---------------IDAAPEEKARGITINTSHVEYQTPLRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLAKQVGVPSIVVFLNKADMID---DEELLELVELEVRELLSKYDFPGEEVPFV 172          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_CLOTE (Elongation factor Tu OS=Clostridium tetani GN=tufA PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 68/190 (35.79%), Postives = 99/190 (52.11%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFV 650
            + K H+NI  IGHVD GK+T T  +   LG       + F K        +FKY  + DK   E+ERGITI  +  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV+ ++   NK D    +   A   E+V+ EV   + + G+  +  P V
Sbjct:    8 RSKPHVNIGTIGHVDHGKTTLTAAITTILGH------KGFAK--------AFKYDEI-DKAPEEKERGITISTSHVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLASRVGVEHIVVFLNKAD----QVDDAELIELVEMEVRELMNEYGFPGDDAPVV 171          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_ANASP (Elongation factor Tu OS=Anabaena sp. (strain PCC 7120) GN=tuf PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 64/196 (32.65%), Postives = 101/196 (51.53%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVK-EVSSYLKKVGYNPEKVPFVPISGFE 668
            + K H+NI  IGHVD GK+T T  +   L  + + V + +++               +D    E+ RGITI+ A  ++ET   +   +D PGH D++KNMITG +Q D A+L++ +T G          QTREH LLA  +GV +++   NK D        A   E+V+ E+   L +  ++ + +P V  SG +
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTAAITMTLAALGQAVAKGYDQ---------------IDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMP-------QTREHILLAKQVGVPKLVVFLNKED----MMEDAELLELVELELRELLTEYEFDGDDIPIVRGSGLQ 177          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU3_STRRA (Elongation factor Tu-3 OS=Streptomyces ramocissimus GN=tuf3 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.338e-21
Identity = 72/201 (35.82%), Postives = 101/201 (50.25%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPISG---FEGD 674
            + K H+NI  +GHVD GK+T T  +                K  AE    +F     +D+   E  RGITI+IA  ++ET TR+Y  V D PGH D++KNM+TG +Q D A+L++ +  G          QT EH LLA  +GV  ++   NK DA   + +    D +  EV   L + GY  +  P V +SG    EGD
Sbjct:    8 RTKPHLNIGTMGHVDHGKTTLTAAIT---------------KVLAERGSGTFVPFDRIDRAPEEAARGITINIAHVEYETDTRHYAHV-DMPGHADYVKNMVTGAAQLDGAILVVSALDGIMP-------QTAEHVLLARQVGVDHIVVALNKADAGDEELT----DLVELEVRDLLSEHGYGGDGAPVVRVSGLKALEGD 181          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_SYNJA (Elongation factor Tu OS=Synechococcus sp. (strain JA-3-3Ab) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 57/189 (30.16%), Postives = 96/189 (50.79%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFV 650
            + K H+N+  IGHVD GK+T T  +   L  + +   +R+++               +D    ER RGITI+ A  +++T + +   +D PGH D++KNMITG +Q D A+L++ +  G          QTREH LLA  +GV  ++   NK+D       +   + +  E+   L K  +  +++P +
Sbjct:    8 RTKPHVNVGTIGHVDHGKTTLTAAITMTLAALGQATAKRYDE---------------IDAAPEERARGITINTAHVEYQTEKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMP-------QTREHILLARQVGVPSLVVFLNKVDMVD---DEELLELVELEIRELLSKYDFPGDEIPII 171          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_PROA2 (Elongation factor Tu OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tuf PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 64/175 (36.57%), Postives = 88/175 (50.29%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSY 608
            +EK H+NI  IGHVD GK+T T  +   L       +  F                 +DK   ERERGITI  A  ++ET + +   ID PGH D+IKNMITG +Q D A+L++  T G          QTREH LLA  + V  ++   NK+D   P+  +    E+ + +S Y
Sbjct:    8 REKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGMAQLREFGD---------------IDKAPEERERGITISTAHVEYETDKRHYAHIDCPGHADYIKNMITGAAQMDGAILVVAGTDGPMP-------QTREHILLARQVNVPALVVFLNKVDIADPELIELVELELRELLSEY 160          
BLAST of CN188149 vs. ExPASy Swiss-Prot
Match: EFTU_MYCS2 (Elongation factor Tu OS=Mycobacterium smegmatis GN=tuf PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.360e-21
Identity = 72/201 (35.82%), Postives = 108/201 (53.73%), Query Frame = 3
Query:   84 KEKTHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNK-RSFKYAWVLDKLKAERERGITIDIALWKFETTRYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKVPFVPIS---GFEGD 674
            + K H+NI  IGHVD GK+T T         I K + ++F     ++N+ R+F     +D    ER+RGITI+I+  +++T + +   +DAPGH D+IKNMITG +Q D A+L++ +T G          QTREH LLA  +GV  ++   NK DA      +   + +  EV   L    ++ E+ P V +S     EGD
Sbjct:    8 RTKPHVNIGTIGHVDHGKTTLTA-------AITKVLHDKFP----DLNESRAFDQ---IDNAPEERQRGITINISHVEYQTDKRHYAHVDAPGHADYIKNMITGAAQMDGAILVVAATDGPMP-------QTREHVLLARQVGVPYILVALNKSDAVD---DEELIELVEMEVRELLAAQDFD-EEAPVVRVSALKALEGD 183          
The following BLAST results are available for this feature:
BLAST of CN188149 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
EFTU_EIMTE3.338e-2133.18Elongation factor Tu, apicoplast OS=Eimeria tenell... [more]
EFTU_CYAPA3.338e-2134.57Elongation factor Tu, cyanelle OS=Cyanophora parad... [more]
EFTU_CYAP43.338e-2130.57Elongation factor Tu OS=Cyanothece sp. (strain PCC... [more]
EFTU_CYACA3.338e-2134.21Elongation factor Tu, chloroplastic OS=Cyanidium c... [more]
EFTU_CLOTE3.338e-2135.79Elongation factor Tu OS=Clostridium tetani GN=tufA... [more]
EFTU_ANASP3.338e-2132.65Elongation factor Tu OS=Anabaena sp. (strain PCC 7... [more]
EFTU3_STRRA3.338e-2135.82Elongation factor Tu-3 OS=Streptomyces ramocissimu... [more]
EFTU_SYNJA4.360e-2130.16Elongation factor Tu OS=Synechococcus sp. (strain ... [more]
EFTU_PROA24.360e-2136.57Elongation factor Tu OS=Prosthecochloris aestuarii... [more]
EFTU_MYCS24.360e-2135.82Elongation factor Tu OS=Mycobacterium smegmatis GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188149 ID=CN188149; Name=CN188149; organism=Citrus sinensis; type=EST; length=734bp
CTCAATTTCCCAATGGCGGCGAGAGAGAACCATTTTCGCGAATATCATTT
TAATAAGGTTTTTTCTAGATTTGCATAATGGGTAAGGAGAAGACTCACAT
CAACATTGTGGTCATCGGCCATGTCGACTCTGGAAAGTCGACCACCACCG
GACACTTGATCTACAAGCTTGGTGGTATTGACAAGCGTGTGATCGAGAGG
TTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAATACGCCTG
GGTGCTCGACAAGCTCAAGGCTGAGCGTGAACGTGGTATTACCATTGATA
TTGCCTTGTGGAAGTTCGAGACCACCAGGTACTACTGCACCGTCATTGAT
GCTCCTGGACATCGTGACTTTATCAAGAACATGATTACCGGTACCTCACA
GGCTGACTGTGCCGTCCTTATCATTGACTCTACCACCGGTGGTTTTGAAG
CTGGTATCTCCAAGGATGGTCAGACTCGTGAGCATGCTTTGCTTGCTTTC
ACCCTTGGTGTGAAGCAGATGATTTGCTGCTGTAACAAGATGGATGCCAC
CACCCCCAAGTACTCAAAGGCTAGGTACGATGAAATTGTGAAGGAGGTCT
CTTCCTACCTGAAGAAGGTTGGATACAACCCCGAGAAAGTCCCATTCGTG
CCCATCTCTGGTTTCGAGGGTGACAACATGATTGAGAGGTCTACCAACCT
TGACTGGTACAAAGGTCCAACCCTGCTGGATGCT
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