CN188148

Overview
NameCN188148
Unique NameCN188148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.276e-52
Identity = 99/191 (51.83%), Postives = 132/191 (69.11%), Query Frame = -2
Query:  183 YKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 755
            Y I GIGTVPVGRVETG++K GM V+F P+    E+KS+EMHHE + +A+PGDNVGFNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+  +++ K
Sbjct:  233 YSISGIGTVPVGRVETGIMKKGMKVSFMPANKDGEIKSIEMHHEEIPQAVPGDNVGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.972e-52
Identity = 99/192 (51.56%), Postives = 134/192 (69.79%), Query Frame = -2
Query:  183 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 758
            VY I GIGTVPVGR+ETG++K GM V+F P+    E+KS+EMHHE   +ALPGDNVGFNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+  +V+ K
Sbjct:  232 VYSISGIGTVPVGRIETGIMKKGMKVSFMPANKDGEIKSIEMHHEEQPQALPGDNVGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.972e-52
Identity = 99/193 (51.30%), Postives = 135/193 (69.95%), Query Frame = -2
Query:  180 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 758
            VY I G+GTVPVGRVETG+++PG  V F P+G   E+K+VEMHHE L  A PGDN+GFNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  236 VYSITGVGTVPVGRVETGIIRPGDKVIFEPAGAVGEIKTVEMHHEQLPSAEPGDNIGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_SULTO (Elongation factor 1-alpha OS=Sulfolobus tokodaii GN=tuf PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.882e-52
Identity = 102/192 (53.12%), Postives = 137/192 (71.35%), Query Frame = -2
Query:  183 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 758
            VY I G+G VPVGRVETGVLK G  V F P G   EV+S+E HH  +++A PGDN+GFNV+ V  KD+KRG VA  S + P   A  FT+Q+I++ HP  +  GY PV+  HT+ +A + +EL +KID ++GKE+EK P+FLK+GD+ +VKM P K +VVE F ++P LGRFA+RDM +TV VGV+  V+ K
Sbjct:  240 VYSISGVGVVPVGRVETGVLKVGDKVVFMPVGKVGEVRSIETHHTKIEKAEPGDNIGFNVRGVEKKDIKRGDVAG-SLNVPPTVADEFTAQIIVIWHPTAVSVGYTPVVHIHTASVACRITELTSKIDPKTGKEVEKNPQFLKSGDSAIVKMKPIKELVVEKFREFPALGRFAMRDMGKTVGVGVVIDVKPK 430          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 3.882e-52
Identity = 100/185 (54.05%), Postives = 127/185 (68.65%), Query Frame = -2
Query:  204 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 758
            VY I G+GTVPVGRVETGV+K G  V F P+G + EVKS+EMHHE  + A PGDN+GFNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  222 VYSITGVGTVPVGRVETGVMKKGENVIFEPAGASGEVKSIEMHHETFETAEPGDNIGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 204.527 bits (519), Expect = 5.070e-52
Identity = 101/192 (52.60%), Postives = 131/192 (68.23%), Query Frame = -2
Query:  183 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 758
            VY I GIGTVPVGRVETGVLKPG  V F P+    +VKS+EMHHE LQ+A PGDN+GFNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  234 VYSITGIGTVPVGRVETGVLKPGDKVIFLPADKQGDVKSIEMHHEPLQQAEPGDNIGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 6.621e-52
Identity = 98/190 (51.58%), Postives = 135/190 (71.05%), Query Frame = -2
Query:  189 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 758
            VY I G+GTVPVGRVETGVLK G  V F P G+  EV+S+EMHHE +++A+PGDN+GFNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  244 VYSITGVGTVPVGRVETGVLKVGDKVVFMPPGVGGEVRSIEMHHEKIEQAMPGDNIGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1AS_PORPU (Elongation factor 1-alpha S OS=Porphyra purpurea GN=TEF-S PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 8.648e-52
Identity = 115/213 (53.99%), Postives = 147/213 (69.01%), Query Frame = -2
Query:  180 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG-LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKEL-------------EKEPK------FLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 758
            VYKIGGIGTVPVGRVETG+LK GM VTF P+G    EVKSVEMHH ++ +A+PGDNVGFNVK + VKD+KRG V  ++K+DP      F + VII +H   I NGY PVLDCHT+HIA KF+ +++K D+R GK+              + EP+        K G++  V + PTK MVVE +S Y PLGRFAVRDM++TVAVGVI+ V+ ++
Sbjct:  269 VYKIGGIGTVPVGRVETGILKAGMQVTFEPAGKAAVEVKSVEMHHTSVPQAIPGDNVGFNVK-LTVKDIKRGDVCGDTKNDPPIPTECFLANVIIQDHKN-IRNGYTPVLDCHTAHIACKFASILSKKDKR-GKQTHDVSDDTEWATKDDAEPRNNRMNIAAKTGESVNVWLQPTKAMVVEAYSMYSPLGRFAVRDMKKTVAVGVIQCVQPRN 478          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.927e-51
Identity = 100/199 (50.25%), Postives = 138/199 (69.35%), Query Frame = -2
Query:  186 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 758
            VY I G+GTVPVGRVETG LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  228 VYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.286e-51
Identity = 101/199 (50.75%), Postives = 136/199 (68.34%), Query Frame = -2
Query:  186 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG------LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 758
            VY I G+GTVPVGRVETG LK G VV F P+       +  EVKS+EMHHE LQEALPGDN+GFNV+ V+  D+KRG VA +    P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  228 VYSIKGVGTVPVGRVETGKLKVGDVVIFEPASTIFHKPIQGEVKSIEMHHEPLQEALPGDNIGFNVRGVSKNDIKRGDVAGHPDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          
The following BLAST results are available for this feature:
BLAST of CN188148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
EF1A_METB62.276e-5251.83Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_METPE2.972e-5251.56Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METM72.972e-5251.30Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_SULTO3.882e-5253.13Elongation factor 1-alpha OS=Sulfolobus tokodaii G... [more]
EF1A_METS33.882e-5254.05Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_THEVO5.070e-5252.60Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_IGNH46.621e-5251.58Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1AS_PORPU8.648e-5253.99Elongation factor 1-alpha S OS=Porphyra purpurea G... [more]
EF1A_PYRHO1.927e-5150.25Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_PYRAB3.286e-5150.75Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188148 ID=CN188148; Name=CN188148; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTAAACCAAATTCAGAGAATTAAAATGACCTCTAC
CGTAAAACAAACTAAAACATGACAAAAATAGCATAAACAGAGAAAATAAA
AGCTAACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCA
GCAGACTTGGTGACCTTGGCACCCGATGGATCCTTCTTTTCAACACTCTT
GATCACACCAACAGCTACAGTCTGACGCATGTCCCTAACAGCAAAACGAC
CAAGGGGTGGGTAGTCGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGA
ATCATCTTAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTT
CTCAAGCTCCTTGCCAGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAA
ACTTGACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCA
TTTCCAATCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAGTT
GGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCAC
GCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCA
CCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATCTCAACAGACTTAAC
CTCAGTTGTCAATCCAGAGGGACCAAATGTCACCACCATACCAGGCTTGA
GCACACCGGTCTCAACGCGACCCACTGGGACGGTTCCAATGCCACCAATC
TTGTACACG
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