CN188148
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12 Identity = 59/199 (29.65%), Postives = 94/199 (47.24%), Query Frame = -2 Query: 186 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 758 V+ I G GTV GRVE GV+K G +V G + +TT V +EM + L E++ GDNVG ++ + +++RG V + K NF +QV ++N +GY P T+ + K T +G+ + K + GD +K +P+ +E RFA+R+ +TV GV+ + K Sbjct: 228 VFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12 Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = -2 Query: 192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758 V I G GTV GRVE G +K G V GL +T + +EM ++L EAL GDNVG ++ + D++RG V +K F SQV I+ + G + P + + V+ +++ KI+ + + + + GD +K+ +P+ +E RFA+R+ +TV GV+ S+ Sbjct: 228 VLSITGRGTVATGRVERGTIKVGETVEL--VGLKDTRSTTITGLEMFQKSLDEALAGDNVGVLLRGIQKNDVERGMVL--AKPRTINPHTKFDSQVYILTK--EEGGRHTPFFEGYRPQFYVRTTDVTGKIE-SFRSDNDNPAQMVMPGDRIKMKVELIQPIAIEKGM------RFAIREGGRTVGAGVVLSI 407
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11 Identity = 54/192 (28.12%), Postives = 92/192 (47.92%), Query Frame = -2 Query: 192 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758 V+ I G GTV GRVE GVL+PG +V L T S+EM + L EALPGDN+G ++ V D++RG V + A + F +QV +++ + G + P + + +++ + +L + + + GD +++ P+ +E RFA+R+ +TV GV+ + Sbjct: 227 VFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHK--RFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11 Identity = 54/192 (28.12%), Postives = 91/192 (47.40%), Query Frame = -2 Query: 192 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758 V+ I G GTV GRVE GVL+PG +V L T S+EM + L EALPGDN+G ++ V D++RG V + A F +QV +++ + G + P + + +++ + +L + + + GD +++ P+ +E RFA+R+ +TV GV+ + Sbjct: 227 VFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHR--KFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11 Identity = 54/193 (27.98%), Postives = 94/193 (48.70%), Query Frame = -2 Query: 192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758 V+ I G GTV GRVE G +K G + GL TT V +EM + L+E++ GDNVG ++ + D++RG V +K FT+QV I+ G + P + V+ +++ KI+ + ++ + + GD +++ +P+ +E RFA+R+ +TV GV+ ++ Sbjct: 228 VFSITGRGTVATGRVERGSVKVGETIEI--VGLRETRTTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKIDIQRGMVL--AKPGSITPHTKFTAQVYILTR--DEGGRHTPFFAGYRPQFYVRTTDVTGKIETFRTDD-DQPTQMVMPGDRIKMEVELIQPIAIEKGM------RFAIREGGRTVGAGVVSAI 407
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 53/198 (26.77%), Postives = 90/198 (45.45%), Query Frame = -2 Query: 186 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG--LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSVEK 758 V+ I G GTV GR+E GV+K G V G TT + +EM + L+E GDNVG ++ V ++++RG V SK NF S+V ++ + G + P + V+ +++ I++ + D +V+M+ + T P+ RFA+R+ +T+ GV+ + K Sbjct: 228 VFSITGRGTVATGRIERGVVKVGDNVEIVGVGDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVL--SKPGTITPHTNFESEVYVLTK--EEGGRHTPFFTGYRPQFYVRTTDVTGSIEQFTA------------DDGTIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIVK 409
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11 Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = -2 Query: 192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758 V+ I G GTV GRVE G ++ G V T T V VEM + L EAL GDNVG ++ + D++RG V +K F++ V ++ +GY P T+ + K +E++ + ++E K + GD + + P+ E RFA+R+ +TV GVI+S+ Sbjct: 298 VFTITGRGTVATGRVERGTIRVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVL--AKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIM--------NDKDEESKMVMPGDRVKLVVELIVPVACEQGM------RFAIREGGKTVGAGVIQSI 477 The following BLAST results are available for this feature:
BLAST of CN188148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 187
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188148 ID=CN188148; Name=CN188148; organism=Citrus sinensis; type=EST; length=759bpback to top |