CN188148

Overview
NameCN188148
Unique NameCN188148
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length759
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2325 contig Csv1_Contig2325:173..931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_PROWI (Elongation factor Tu, plastid OS=Prototheca wickerhamii GN=tufA PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.007e-12
Identity = 59/199 (29.65%), Postives = 94/199 (47.24%), Query Frame = -2
Query:  186 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMN-----HPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 758
            V+ I G GTV  GRVE GV+K G    +V  G + +TT V  +EM  + L E++ GDNVG  ++ +   +++RG V +  K        NF +QV ++N           +GY P     T+ +  K     T     +G+ +    K +  GD   +K    +P+ +E         RFA+R+  +TV  GV+  + K
Sbjct:  228 VFSITGRGTVATGRVERGVVKIGDSVEIVGLGATKITT-VTGLEMFQKTLDESIAGDNVGILLRGIQKTEIQRGMVLAKPKS--ITPHTNFEAQVYVLNKEEGGRDTPFFSGYRPQFYVRTTDVTGKIESFCTD----AGEPI----KMVLPGDRIKMKAELIQPIAIERNM------RFAIREGGKTVGAGVVGKILK 409          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_EUGGR (Elongation factor Tu, chloroplastic OS=Euglena gracilis GN=tufA PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.749e-12
Identity = 57/193 (29.53%), Postives = 93/193 (48.19%), Query Frame = -2
Query:  192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758
            V  I G GTV  GRVE G +K G  V     GL    +T +  +EM  ++L EAL GDNVG  ++ +   D++RG V   +K         F SQV I+    + G  + P  + +     V+ +++  KI+     + +   + +  GD   +K+   +P+ +E         RFA+R+  +TV  GV+ S+
Sbjct:  228 VLSITGRGTVATGRVERGTIKVGETVEL--VGLKDTRSTTITGLEMFQKSLDEALAGDNVGVLLRGIQKNDVERGMVL--AKPRTINPHTKFDSQVYILTK--EEGGRHTPFFEGYRPQFYVRTTDVTGKIE-SFRSDNDNPAQMVMPGDRIKMKVELIQPIAIEKGM------RFAIREGGRTVGAGVVLSI 407          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_AQUAE (Elongation factor Tu OS=Aquifex aeolicus GN=tufA PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.324e-11
Identity = 54/192 (28.12%), Postives = 92/192 (47.92%), Query Frame = -2
Query:  192 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758
            V+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A +   F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  227 VFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHK--RFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_AQUPY (Elongation factor Tu OS=Aquifex pyrophilus GN=tuf PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.342e-11
Identity = 54/192 (28.12%), Postives = 91/192 (47.40%), Query Frame = -2
Query:  192 VYKIGGIGTVPVGRVETGVLKPG---MVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758
            V+ I G GTV  GRVE GVL+PG    +V      L T   S+EM  + L EALPGDN+G  ++ V   D++RG V +      A     F +QV +++   + G  + P    +      + +++   +      +L +  + +  GD   +++    P+ +E         RFA+R+  +TV  GV+  +
Sbjct:  227 VFSISGRGTVVTGRVERGVLRPGDEVEIVGLREEPLKTVATSIEMFRKVLDEALPGDNIGVLLRGVGKDDVERGQVLAQPGSVKAHR--KFRAQVYVLSK--EEGGRHTPFFVNYRPQFYFRTADVTGTV-----VKLPEGVEMVMPGDNVELEVELIAPVALEEGL------RFAIREGGRTVGAGVVTKI 403          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_LEPTE (Elongation factor Tu, chloroplastic OS=Leptosira terrestris GN=tufA PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.406e-11
Identity = 54/193 (27.98%), Postives = 94/193 (48.70%), Query Frame = -2
Query:  192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGL----TTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758
            V+ I G GTV  GRVE G +K G  +     GL    TT V  +EM  + L+E++ GDNVG  ++ +   D++RG V   +K         FT+QV I+      G  + P    +     V+ +++  KI+     + ++  + +  GD   +++   +P+ +E         RFA+R+  +TV  GV+ ++
Sbjct:  228 VFSITGRGTVATGRVERGSVKVGETIEI--VGLRETRTTTVTGLEMFQKTLEESVAGDNVGVLLRGIQKIDIQRGMVL--AKPGSITPHTKFTAQVYILTR--DEGGRHTPFFAGYRPQFYVRTTDVTGKIETFRTDD-DQPTQMVMPGDRIKMEVELIQPIAIEKGM------RFAIREGGRTVGAGVVSAI 407          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU_THAPS (Elongation factor Tu, chloroplastic OS=Thalassiosira pseudonana GN=tufA PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 53/198 (26.77%), Postives = 90/198 (45.45%), Query Frame = -2
Query:  186 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSG--LTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLG-----RFAVRDMRQTVAVGVIKSVEK 758
            V+ I G GTV  GR+E GV+K G  V     G   TT +  +EM  + L+E   GDNVG  ++ V  ++++RG V   SK        NF S+V ++    + G  + P    +     V+ +++   I++ +              D  +V+M+     +  T     P+      RFA+R+  +T+  GV+  + K
Sbjct:  228 VFSITGRGTVATGRIERGVVKVGDNVEIVGVGDTQTTTITGIEMFQKTLEEGFAGDNVGILLRGVTRENIERGMVL--SKPGTITPHTNFESEVYVLTK--EEGGRHTPFFTGYRPQFYVRTTDVTGSIEQFTA------------DDGTIVEMVMPGDRIKMTAELIYPVAIEEGMRFAIREGGRTIGAGVVSKIVK 409          
BLAST of CN188148 vs. ExPASy Swiss-Prot
Match: EFTU2_SOYBN (Elongation factor Tu, chloroplastic OS=Glycine max GN=TUFB1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.673e-11
Identity = 57/196 (29.08%), Postives = 89/196 (45.41%), Query Frame = -2
Query:  192 VYKIGGIGTVPVGRVETGVLKPGMVVTFGPSGLT--TEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIM-----NHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 758
            V+ I G GTV  GRVE G ++ G  V       T  T V  VEM  + L EAL GDNVG  ++ +   D++RG V   +K         F++ V ++            +GY P     T+ +  K +E++         + ++E K +  GD   + +    P+  E         RFA+R+  +TV  GVI+S+
Sbjct:  298 VFTITGRGTVATGRVERGTIRVGETVDIVGVKDTRNTTVTGVEMFQKILDEALAGDNVGLLLRGIQKTDIQRGMVL--AKPGTITPHTKFSAIVYVLKKEEGGRHSPFFSGYRPQFYMRTTDVTGKVTEIM--------NDKDEESKMVMPGDRVKLVVELIVPVACEQGM------RFAIREGGKTVGAGVIQSI 477          
The following BLAST results are available for this feature:
BLAST of CN188148 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 187
Match NameE-valueIdentityDescription
EFTU_PROWI3.007e-1229.65Elongation factor Tu, plastid OS=Prototheca wicker... [more]
EFTU_EUGGR8.749e-1229.53Elongation factor Tu, chloroplastic OS=Euglena gra... [more]
EFTU_AQUAE3.324e-1128.13Elongation factor Tu OS=Aquifex aeolicus GN=tufA P... [more]
EFTU_AQUPY4.342e-1128.13Elongation factor Tu OS=Aquifex pyrophilus GN=tuf ... [more]
EFTU_LEPTE7.406e-1127.98Elongation factor Tu, chloroplastic OS=Leptosira t... [more]
EFTU_THAPS9.673e-1126.77Elongation factor Tu, chloroplastic OS=Thalassiosi... [more]
EFTU2_SOYBN9.673e-1129.08Elongation factor Tu, chloroplastic OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188148 ID=CN188148; Name=CN188148; organism=Citrus sinensis; type=EST; length=759bp
TTTTTTTTTTTTTTTTTAAACCAAATTCAGAGAATTAAAATGACCTCTAC
CGTAAAACAAACTAAAACATGACAAAAATAGCATAAACAGAGAAAATAAA
AGCTAACTATAGCAGATAGATCCCAAAAAACTCCTCACTTCTTCTTGGCA
GCAGACTTGGTGACCTTGGCACCCGATGGATCCTTCTTTTCAACACTCTT
GATCACACCAACAGCTACAGTCTGACGCATGTCCCTAACAGCAAAACGAC
CAAGGGGTGGGTAGTCGGAGAAGGTCTCAACAACCATGGGCTTGGTGGGA
ATCATCTTAACCATTCCGGCATCTCCATTCTTCAAGAACTTGGGCTCCTT
CTCAAGCTCCTTGCCAGATCGCCTGTCAATCTTGGTCACAAGCTCAGAAA
ACTTGACAGCAATGTGGGAGGTGTGGCAGTCAAGCACTGGGGCATATCCA
TTTCCAATCTGGCCAGGATGGTTCATGATGATGACCTGTGAAGTGAAGTT
GGCAGCTTCCCTGGCCGGATCATCCTTCGAGTTGGAAGCAACAAAACCAC
GCTTGAGATCCTTGACAGCAACGTTCTTCACGTTGAAGCCAACATTGTCA
CCCGGAAGGGCCTCCTGCAGAGCTTCGTGGTGCATCTCAACAGACTTAAC
CTCAGTTGTCAATCCAGAGGGACCAAATGTCACCACCATACCAGGCTTGA
GCACACCGGTCTCAACGCGACCCACTGGGACGGTTCCAATGCCACCAATC
TTGTACACG
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