CN188146

Overview
NameCN188146
Unique NameCN188146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig295 contig Csv1_Contig295:433..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71B_BOSMU (Heat shock 70 kDa protein 1B OS=Bos mutus grunniens GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.711e-39
Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DP +Q D+K  PF V    D  P +   Y GET+ F P ++  M+L+ +K IAE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDPVVQSDMKHWPFRVINDGDK-PKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVEATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP71_RAT (Heat shock 70 kDa protein 1A/1B OS=Rattus norvegicus GN=Hspa1a PE=2 SV=2)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 89/216 (41.20%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DP +Q D+K  PF V    D  P +   Y GE R F P ++  M+L+ +K IAE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDPVVQSDMKHWPFQVVNDGDK-PKVQVNYKGENRSFYPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP70_ACHKL (Heat shock 70 kDa protein OS=Achlya klebsiana GN=HSP70 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 84/216 (38.89%), Postives = 128/216 (59.26%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DP  Q D+K  PF VT G    P I   + GET+ F P ++  M+L  +K +AE+ +  AV +  I +P YF D QR+A  DA  IAGL+ LR+ +E T  A+AYG+ K    +  + NV   D+G  +  V +   ++G  ++   + D  +GG DFD  L  HF A+FK +++ D++QN RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   78 RKFNDPATQADIKHWPFKVTPGAGDKPQITVEFKGETKTFQPEEISSMVLIKMKEVAEAFIGTAVNNAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTRAAIAYGLDK----KGGERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVDHFTAEFKRKHRKDMTQNQRALRRLRTACERAKRTLSSSAQAYIEIDSL 289          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71B_PIG (Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA1B PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 2.235e-39
Identity = 89/216 (41.20%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DP +Q D+K  PF V    D  P +   Y GET+ F P ++  M+L+ +K IAE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDPVVQADMKHWPFRVINDGDK-PKVQVSYKGETKAFYPEEISSMVLTKMKEIAEAYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP73_YEAST (Heat shock protein SSA3 OS=Saccharomyces cerevisiae GN=SSA3 PE=1 SV=3)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 85/216 (39.35%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DPE+  D K  PF V    DG P++   Y GET+ FTP ++  M+LS +K  AE+ L   V D  + +P YF D QR+A  DA TIAG++ LR+ +E TA A+AYG+ K    E+   NV   D+G  +  V +    +G  ++   + D  +GG DFD  L  H A +FK + K D+S N R+  RLR A E+ K+ LS++ +  + I+ L
Sbjct:   74 RKFDDPEVTTDAKHFPFKVISR-DGKPVVQVEYKGETKTFTPEEISSMVLSKMKETAENYLGTTVNDAVVTVPAYFNDSQRQATKDAGTIAGMNVLRIINEPTAAAIAYGLDKKGRAEH---NVLIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDNRLVNHLATEFKRKTKKDISNNQRSLRRLRTAAERAKRALSSSSQTSIEIDSL 285          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP72_PICAN (Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 PE=3 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 2.919e-39
Identity = 87/216 (40.28%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DPE+Q D+K  PF V +   G P I   + GET+VFTP ++  M+L+ +K  AES L   V D  I +P YF D QR+A  DA  IAGL+ +R+ +E TA A+AYG+   D     + NV   D+G  +  V +   + G  ++   + D  +GG DFD  L  HF  +FK + K D+  N RA  RLR ACE+ K  LS++ +  L I+ L
Sbjct:   74 RKFDDPEVQGDIKHFPFKVVD-KSGKPQIQVEFKGETKVFTPEEISSMVLTKMKETAESFLGTTVKDAVITVPAYFNDSQRQATKDAGLIAGLNVMRIINEPTAAAIAYGL---DKKSQGEQNVLIFDLGGGTFDVSLLSIEDGIFEVKATAGDTHLGGEDFDNRLVNHFINEFKRKNKKDICGNQRALRRLRTACERAKTTLSSSAQTSLEIDSL 285          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP71_PUCGR (Heat shock protein HSS1 OS=Puccinia graminis GN=HSS1 PE=3 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 3.812e-39
Identity = 84/216 (38.89%), Postives = 127/216 (58.80%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+D E+Q D+K  PF V +   G P I  +Y GE + F+P ++  M+L+ +K +AES L   V    + +P YF D QR+A  DA TI+GL+ LR+ +E TA A+AYG+ K  + E    NV   D+G  +  V +   ++G  ++   + D  +GG DFD  L  HF  +FK ++K D+S N RA  RLR ACE+ K+ LS+  +  + I+ L
Sbjct:   74 RKFADAEVQSDIKHFPFTVFD-KGGKPYIRVQYRGEDKEFSPEEISSMILTKMKEVAESYLGGTVTSAVVTVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGLDKKTVGER---NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFKRKHKKDLSSNPRALRRLRTACERAKRTLSSAAQTTIEIDSL 285          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_SAGOE (Heat shock cognate 71 kDa protein OS=Saguinus oedipus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 86/216 (39.81%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V     G P +   Y GET+ F P +V  M+L+ +K IAE+ L   V +  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  HF A+FK ++K D+S+N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDAVVQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL---DKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_RAT (Heat shock cognate 71 kDa protein OS=Rattus norvegicus GN=Hspa8 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 86/216 (39.81%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V     G P +   Y GET+ F P +V  M+L+ +K IAE+ L   V +  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  HF A+FK ++K D+S+N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDAVVQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL---DKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_PONAB (Heat shock cognate 71 kDa protein OS=Pongo abelii GN=HSPA8 PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 6.503e-39
Identity = 86/216 (39.81%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V     G P +   Y GET+ F P +V  M+L+ +K IAE+ L   V +  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  HF A+FK ++K D+S+N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDAVVQSDMKHWPFMVVNDA-GRPKVQVEYKGETKSFYPEEVSSMVLAKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL---DKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
The following BLAST results are available for this feature:
BLAST of CN188146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71B_BOSMU1.711e-3941.20Heat shock 70 kDa protein 1B OS=Bos mutus grunnien... [more]
HSP71_RAT2.235e-3941.20Heat shock 70 kDa protein 1A/1B OS=Rattus norvegic... [more]
HSP70_ACHKL2.235e-3938.89Heat shock 70 kDa protein OS=Achlya klebsiana GN=H... [more]
HS71B_PIG2.235e-3941.20Heat shock 70 kDa protein 1B OS=Sus scrofa GN=HSPA... [more]
HSP73_YEAST2.919e-3939.35Heat shock protein SSA3 OS=Saccharomyces cerevisia... [more]
HSP72_PICAN2.919e-3940.28Heat shock protein 70 2 OS=Pichia angusta GN=HSA2 ... [more]
HSP71_PUCGR3.812e-3938.89Heat shock protein HSS1 OS=Puccinia graminis GN=HS... [more]
HSP7C_SAGOE6.503e-3939.81Heat shock cognate 71 kDa protein OS=Saguinus oedi... [more]
HSP7C_RAT6.503e-3939.81Heat shock cognate 71 kDa protein OS=Rattus norveg... [more]
HSP7C_PONAB6.503e-3939.81Heat shock cognate 71 kDa protein OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188146 ID=CN188146; Name=CN188146; organism=Citrus sinensis; type=EST; length=654bp
AGTCGACAATTCTCTGATCCTGAGCTGCAAAGGGATCTTAAGTCACTGCC
TTTTGCTGTAACTGAAGGTCCTGATGGTTACCCTTTAATACATGCACGAT
ATTTGGGTGAAACAAGAGTGTTTACTCCAACCCAAGTTTTGGGTATGTTG
CTCTCAAATTTAAAAGCCATAGCTGAGAGTAATTTGAATGCAGCAGTTGT
GGACTGCTGCATTGGAATTCCTGTTTATTTCACTGATCTCCAAAGAAGAG
CTGTTATAGATGCAGCCACAATTGCAGGATTGCATCCGCTTCGTTTGTTT
CATGAAACTACAGCCACAGCATTGGCTTATGGTATTTATAAGACAGATCT
ACCAGAAAATGACCAATTAAATGTTGCGTTTGTTGACATTGGGCATGCAA
GCTTGCAAGTATGCATAGCTGGTTTCAAGAAGGGTCAACTTAAGATATTG
GGTCATTCCTTTGATCGATCCGTGGGTGGTAGAGATTTTGATGAAGTTCT
ATTCCAGCATTTTGCAGCTAAGTTCAAGGAAGAGTACAAGATTGATGTCT
CCCAAAATGCTAGGGCTTCCCTCAGGTTGAGGGTTGCTTGTGAGAAACTG
AAGAAGGTTCTCAGTGCTAATCCCGAGGCACCTTTGAATATTGAATGCTT
AATG
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