CN188146

Overview
NameCN188146
Unique NameCN188146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_THISH (Chaperone protein dnaK OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 70/217 (32.26%), Postives = 112/217 (51.61%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFK----KGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R+F +PE+Q+D+K +P+ + +  +G   +  R     +   P ++   +L  +K  AE  L   V +  I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYG+ K    +     VA  D+G  +  V I        + Q ++L  + D  +GG DFD  L  +   +FK+E  ID+  +  A  RL+ + EK K  LS++ +  +N+
Sbjct:   75 RRFEEPEVQKDIKLVPYEIFKADNGDAWVRVR----DKKMAPPEISARVLQKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDK----KRGDSKVAVYDLGGGTFDVSIIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVEEFKKEQGIDLKGDPLAMQRLKESAEKAKIELSSSQQTDVNL 283          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_STRSY (Chaperone protein dnaK OS=Streptococcus suis (strain 05ZYH33) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  121 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLS 615
            +TP ++  M+L  LK  AE  L   V    I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYG+ KTD  E     +   D+G  +  V I     G   +L  + D  +GG DFD+ +  H  A+FK+E  ID+S +  A  RL+ A EK KK LS
Sbjct:   84 YTPQEISAMILQYLKGYAEEYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDE----KILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKENGIDLSADKMALQRLKDAAEKAKKDLS 244          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_STRS2 (Chaperone protein dnaK OS=Streptococcus suis (strain 98HAH33) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  121 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLS 615
            +TP ++  M+L  LK  AE  L   V    I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYG+ KTD  E     +   D+G  +  V I     G   +L  + D  +GG DFD+ +  H  A+FK+E  ID+S +  A  RL+ A EK KK LS
Sbjct:   84 YTPQEISAMILQYLKGYAEEYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKDE----KILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKENGIDLSADKMALQRLKDAAEKAKKDLS 244          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_STRGC (Chaperone protein dnaK OS=Streptococcus gordonii (strain Challis / ATCC 35105 / CH1 / DL1 / V288) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 67/165 (40.61%), Postives = 89/165 (53.94%), Query Frame = 1
Query:  121 FTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLS 615
            +TP ++  M+L  LK  AE  L   V    I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYG+ KTD  E     +   D+G  +  V I     G   +L  + D  +GG DFD+ +  H  A+FK+E  ID+S +  A  RL+ A EK KK LS
Sbjct:   84 YTPQEISAMILQYLKGYAEEYLGEKVTKAVITVPAYFNDAQRQATKDAGKIAGLEVERIVNEPTAAALAYGLDKTDKEE----KILVFDLGGGTFDVSILELGDGVFDVLATAGDNKLGGDDFDQKIIDHMVAEFKKENGIDLSTDKMALQRLKDAAEKAKKDLS 244          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB9 (Chaperone protein dnaK OS=Shewanella baltica (strain OS195) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQ----LKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R+F D E+QRD+  +PF +    +G   + +R         P QV   +L  +K  AE  L   V +  I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYGI   D  + D + VA  D+G  +  + I            ++L  + D  +GG DFD  L  + A +FK+E  +D+ ++  A  RL+ A EK K  LS+     +N+
Sbjct:   74 RRFKDDEVQRDVNIMPFKIIAADNGDAWVESR----GNKMAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGI---DKKQGDNI-VAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNHTEVNL 282          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB8 (Chaperone protein dnaK OS=Shewanella baltica (strain OS185) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQ----LKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R+F D E+QRD+  +PF +    +G   + +R         P QV   +L  +K  AE  L   V +  I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYGI   D  + D + VA  D+G  +  + I            ++L  + D  +GG DFD  L  + A +FK+E  +D+ ++  A  RL+ A EK K  LS+     +N+
Sbjct:   74 RRFKDDEVQRDVNIMPFKIIAADNGDAWVESR----GNKMAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGI---DKKQGDNI-VAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNHTEVNL 282          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB5 (Chaperone protein dnaK OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQ----LKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R+F D E+QRD+  +PF +    +G   + +R         P QV   +L  +K  AE  L   V +  I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYGI   D  + D + VA  D+G  +  + I            ++L  + D  +GG DFD  L  + A +FK+E  +D+ ++  A  RL+ A EK K  LS+     +N+
Sbjct:   74 RRFKDDEVQRDVNIMPFKIIAADNGDAWVESR----GNKMAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGI---DKKQGDNI-VAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNHTEVNL 282          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_SHEB2 (Chaperone protein dnaK OS=Shewanella baltica (strain OS223) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 74/217 (34.10%), Postives = 109/217 (50.23%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQ----LKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R+F D E+QRD+  +PF +    +G   + +R         P QV   +L  +K  AE  L   V +  I +P YF D QR+A  DA  IAGL   R+ +E TA ALAYGI   D  + D + VA  D+G  +  + I            ++L  + D  +GG DFD  L  + A +FK+E  +D+ ++  A  RL+ A EK K  LS+     +N+
Sbjct:   74 RRFKDDEVQRDVNIMPFKIIAADNGDAWVESR----GNKMAPPQVSAEILKKMKKTAEDFLGEEVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGI---DKKQGDNI-VAVYDLGGGTFDISIIEIDSNDGDQTFEVLATNGDTHLGGEDFDNRLINYLADEFKKEQGLDLRKDPLAMQRLKEAAEKAKIELSSTNHTEVNL 282          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_NITWN (Chaperone protein dnaK OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 66/213 (30.99%), Postives = 113/213 (53.05%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R++ DP +++D + +P+ + +  +G   + A    + + ++P+Q+    L  +K  AE++L   V    I +P YF D QR+A  DA  IAGL  LR+ +E TA ALAYG+ K+         +A  D+G  +  V +     G  ++   + D  +GG DFD  L  + A +F++E  I++  +  A  RL+ A EK K  LS+  +  +N+
Sbjct:   75 RRYDDPTVEKDKQLVPYKIAKAGNGDAWVEA----DGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKAG-----TIAVYDLGGGTFDVSVLEIGDGVFEVKSTNGDTFLGGEDFDMRLVNYLADEFQKEQGINLRNDKLALQRLKEAAEKAKIELSSTTQTEINL 278          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: DNAK_METSB (Chaperone protein dnaK OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=dnaK PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.399e-25
Identity = 69/213 (32.39%), Postives = 111/213 (52.11%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNI 642
            R + DP  ++D+  +P+ +    +G   + A    + + ++P+Q+   +L  +K  AE+ L   V    I +P YF D QR+A  DA  IAGL  LR+ +E TA ALAYG+ K          +A  D+G  +  V I     G  ++   + D  +GG DFD  L ++ A +FK+E  ID+ ++  A  RL+ A EK K  LS+  +  +N+
Sbjct:   75 RTYDDPMTKKDMGLVPYKIIRASNGDAWVEA----DGKQYSPSQISAFILQKMKETAEAYLGQPVSQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKGAGV-----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDVRLVEYLADEFKKENGIDLKKDKLALQRLKEAAEKAKIELSSATQTEINL 278          
The following BLAST results are available for this feature:
BLAST of CN188146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_THISH2.399e-2532.26Chaperone protein dnaK OS=Thioalkalivibrio sp. (st... [more]
DNAK_STRSY2.399e-2540.61Chaperone protein dnaK OS=Streptococcus suis (stra... [more]
DNAK_STRS22.399e-2540.61Chaperone protein dnaK OS=Streptococcus suis (stra... [more]
DNAK_STRGC2.399e-2540.61Chaperone protein dnaK OS=Streptococcus gordonii (... [more]
DNAK_SHEB92.399e-2534.10Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB82.399e-2534.10Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB52.399e-2534.10Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_SHEB22.399e-2534.10Chaperone protein dnaK OS=Shewanella baltica (stra... [more]
DNAK_NITWN2.399e-2530.99Chaperone protein dnaK OS=Nitrobacter winogradskyi... [more]
DNAK_METSB2.399e-2532.39Chaperone protein dnaK OS=Methylocella silvestris ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188146 ID=CN188146; Name=CN188146; organism=Citrus sinensis; type=EST; length=654bp
AGTCGACAATTCTCTGATCCTGAGCTGCAAAGGGATCTTAAGTCACTGCC
TTTTGCTGTAACTGAAGGTCCTGATGGTTACCCTTTAATACATGCACGAT
ATTTGGGTGAAACAAGAGTGTTTACTCCAACCCAAGTTTTGGGTATGTTG
CTCTCAAATTTAAAAGCCATAGCTGAGAGTAATTTGAATGCAGCAGTTGT
GGACTGCTGCATTGGAATTCCTGTTTATTTCACTGATCTCCAAAGAAGAG
CTGTTATAGATGCAGCCACAATTGCAGGATTGCATCCGCTTCGTTTGTTT
CATGAAACTACAGCCACAGCATTGGCTTATGGTATTTATAAGACAGATCT
ACCAGAAAATGACCAATTAAATGTTGCGTTTGTTGACATTGGGCATGCAA
GCTTGCAAGTATGCATAGCTGGTTTCAAGAAGGGTCAACTTAAGATATTG
GGTCATTCCTTTGATCGATCCGTGGGTGGTAGAGATTTTGATGAAGTTCT
ATTCCAGCATTTTGCAGCTAAGTTCAAGGAAGAGTACAAGATTGATGTCT
CCCAAAATGCTAGGGCTTCCCTCAGGTTGAGGGTTGCTTGTGAGAAACTG
AAGAAGGTTCTCAGTGCTAATCCCGAGGCACCTTTGAATATTGAATGCTT
AATG
back to top