CN188146

Overview
NameCN188146
Unique NameCN188146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig295 contig Csv1_Contig295:433..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71B_MOUSE (Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hspa1b PE=1 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 88/216 (40.74%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V    D  P +   Y GE+R F P ++  M+L+ +K IAE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDAVVQSDMKHWPFQVVNDGDK-PKVQVNYKGESRSFFPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71A_MOUSE (Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hspa1a PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.449e-38
Identity = 88/216 (40.74%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V    D  P +   Y GE+R F P ++  M+L+ +K IAE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDAVVQSDMKHWPFQVVNDGDK-PKVQVNYKGESRSFFPEEISSMVLTKMKEIAEAYLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_CHICK (Heat shock cognate 71 kDa protein OS=Gallus gallus GN=HSPA8 PE=1 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 84/216 (38.89%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V     G P +   Y GET+ F P ++  M+L+ +K IAE+ L   V +  + +P YF D QR+   DA TIAGL+ LR+ +E TA A+AYG+   D     + N+   D+G  +  V I   + G  ++   + D  +GG DFD  L  HF A+FK ++K D+S+N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDSVVQSDMKHWPFTVVNDA-GRPKVQVEYKGETKSFYPEEISSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQGTKDAGTIAGLNVLRIINEPTAAAIAYGL---DKKVGAERNLLIFDLGGGTFDVSILTIENGIFEVKSTAGDTHLGGEDFDNRLVNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP71_CANAL (Heat shock protein SSA1 OS=Candida albicans GN=SSA1 PE=1 SV=2)

HSP 1 Score: 159.073 bits (401), Expect = 1.892e-38
Identity = 85/216 (39.35%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DPE+  D K  PF V +   G P+I   Y GET+ F+P ++  M+L+ +K IAE  L + V D  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+ K       + NV   D+G  +  V +    +G  ++   + D  +GG DFD  L   F  +FK + K D+S N RA  RLR ACE+ K+ LS++ +  + I+ L
Sbjct:   74 RKFDDPEVINDAKHFPFKVIDKA-GKPVIQVEYKGETKTFSPEEISSMVLTKMKEIAEGYLGSTVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKG--SRGEHNVLIFDLGGGTFDVSLLAIDEGIFEVKATAGDTHLGGEDFDNRLVNFFIQEFKRKNKKDISTNQRALRRLRTACERAKRTLSSSAQTSIEIDSL 286          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_TRYBB (Heat shock 70 kDa protein 4 OS=Trypanosoma brucei brucei PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 87/217 (40.09%), Postives = 123/217 (56.68%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYK-IDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+FSD  +Q D+K  PF V    D  P+I  ++ GET+ F P ++  M+L  +K +AES L   V    + +P YF D QR+A  DA TIAGL  LR+ +E TA A+AYG+ K D  E  + NV   D+G  +  V +     G  ++   + D  +GG DFD  L  HF  +FK + K  D+S N RA  RLR ACE+ K+ LS+  +A + I+ L
Sbjct:   76 RKFSDSVVQSDMKHWPFKVVTKGDDKPVIQVQFRGETKTFNPEEISSMVLLKMKEVAESYLGKQVAKAVVTVPAYFNDSQRQATKDAGTIAGLEVLRIINEPTAAAIAYGLDKAD--EGKERNVLIFDLGGGTFDVTLLTIDGGIFEVKATNGDTHLGGEDFDNRLVAHFTEEFKRKNKGKDLSSNLRALRRLRTACERAKRTLSSAAQATIEIDAL 290          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71A_PIG (Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA1A PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 2.471e-38
Identity = 89/216 (41.20%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DP +Q D+K  PF V    D  P +   Y GET+ F P ++  M+L+ +K IAE  L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +T   E    NV   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   76 RKFGDPVVQGDMKHWPFRVINDGDK-PKVQVSYKGETKGFYPEEISSMVLTKMKEIAEGYLGHPVSNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDRTGKGER---NVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVNHFVEEFKRKHKKDYSQNKRAVRRLRTACERAKRTLSSSTQASLEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP70_EMENI (Heat shock 70 kDa protein OS=Emericella nidulans GN=hsp70 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.227e-38
Identity = 84/216 (38.89%), Postives = 126/216 (58.33%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D E+Q D+K  PF V +   G P+I   + GET+ FTP ++  M+L+ ++  AE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V +   ++G  ++   + D  +GG DFD  L  HF  +FK ++K D+S NARA  RLR ACE+ K+ LS+  +  + I+ L
Sbjct:   74 RRFGDAEVQADMKHWPFKVVD-KSGKPIIEVEFKGETKQFTPEEISSMVLTKMRETAEAFLGGTVNNAVITVPAYFNDSQRQATKDAGLIAGLNVLRIINEPTAAAIAYGL---DKKVEGERNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRLVNHFVTEFKRKHKKDLSTNARALRRLRTACERAKRTLSSAAQTSIEIDSL 285          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 81/216 (37.50%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+FSDP +Q D+K  PF V  GP   P+I   Y GE + F   ++  M+L+ +K IAE+ L   + +  + +P YF D QR+A  DA  IAGL+ +R+ +E TA A+AYG+ K      ++ NV   D+G  +  V +   ++G  ++   + D  +GG DFD  +  HF  +FK + K D+S N RA  RLR ACE+ K+ LS+  +  + I+ L
Sbjct:   79 RRFSDPSVQSDIKLWPFKVIPGPGDKPMIVVTYKGEEKQFAAEEISSMVLTKMKEIAEAYLGTTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKASSAGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL 293          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7B_DROME (Heat shock 70 kDa protein cognate 2 OS=Drosophila melanogaster GN=Hsc70-2 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.215e-38
Identity = 89/217 (41.01%), Postives = 125/217 (57.60%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQL-KILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D ++Q DLK  PF V     G P I   + GE + F P ++  M+L+ ++ IAE  L   V D  + +P YF D QR+A  DA +IAGL+ LR+ +E TA ALAYG+ K    E    NV   D+G  +  V +    +G L ++   + D  +GG DFD  L  HFA +FK ++K D+  NARA  RLR ACE+ K+ LS++ EA L I+ L
Sbjct:   76 RKFDDKKIQEDLKLWPFKVIN-EKGKPKIEVEFKGERKRFAPEEISSMVLTKMREIAEVYLGGKVKDAVVTVPAYFNDSQRQATKDAGSIAGLNVLRIINEPTAAALAYGLDKNLKGER---NVLIFDLGGGTFDVSVLSIDEGSLFEVKATAGDTHLGGEDFDNRLVNHFAEEFKRKHKSDIKGNARALRRLRTACERAKRTLSSSTEASLEIDAL 288          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7C_CRIGR (Heat shock cognate 71 kDa protein OS=Cricetulus griseus GN=HSPA8 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.226e-37
Identity = 85/216 (39.35%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V     G P +   Y GE + F P +V  M+L+ +K IAE+ L   V +  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  HF A+FK   K D+S+N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDAVVQSDMKHWPFMVVNDA-GRPKVQVEYKGEAKSFYPEEVSSMVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL---DKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRNDKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
The following BLAST results are available for this feature:
BLAST of CN188146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HS71B_MOUSE1.449e-3840.74Heat shock 70 kDa protein 1B OS=Mus musculus GN=Hs... [more]
HS71A_MOUSE1.449e-3840.74Heat shock 70 kDa protein 1A OS=Mus musculus GN=Hs... [more]
HSP7C_CHICK1.892e-3838.89Heat shock cognate 71 kDa protein OS=Gallus gallus... [more]
HSP71_CANAL1.892e-3839.35Heat shock protein SSA1 OS=Candida albicans GN=SSA... [more]
HSP74_TRYBB2.471e-3840.09Heat shock 70 kDa protein 4 OS=Trypanosoma brucei ... [more]
HS71A_PIG2.471e-3841.20Heat shock 70 kDa protein 1A OS=Sus scrofa GN=HSPA... [more]
HSP70_EMENI3.227e-3838.89Heat shock 70 kDa protein OS=Emericella nidulans G... [more]
HSP7C_PETHY4.215e-3837.50Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP7B_DROME4.215e-3841.01Heat shock 70 kDa protein cognate 2 OS=Drosophila ... [more]
HSP7C_CRIGR1.226e-3739.35Heat shock cognate 71 kDa protein OS=Cricetulus gr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188146 ID=CN188146; Name=CN188146; organism=Citrus sinensis; type=EST; length=654bp
AGTCGACAATTCTCTGATCCTGAGCTGCAAAGGGATCTTAAGTCACTGCC
TTTTGCTGTAACTGAAGGTCCTGATGGTTACCCTTTAATACATGCACGAT
ATTTGGGTGAAACAAGAGTGTTTACTCCAACCCAAGTTTTGGGTATGTTG
CTCTCAAATTTAAAAGCCATAGCTGAGAGTAATTTGAATGCAGCAGTTGT
GGACTGCTGCATTGGAATTCCTGTTTATTTCACTGATCTCCAAAGAAGAG
CTGTTATAGATGCAGCCACAATTGCAGGATTGCATCCGCTTCGTTTGTTT
CATGAAACTACAGCCACAGCATTGGCTTATGGTATTTATAAGACAGATCT
ACCAGAAAATGACCAATTAAATGTTGCGTTTGTTGACATTGGGCATGCAA
GCTTGCAAGTATGCATAGCTGGTTTCAAGAAGGGTCAACTTAAGATATTG
GGTCATTCCTTTGATCGATCCGTGGGTGGTAGAGATTTTGATGAAGTTCT
ATTCCAGCATTTTGCAGCTAAGTTCAAGGAAGAGTACAAGATTGATGTCT
CCCAAAATGCTAGGGCTTCCCTCAGGTTGAGGGTTGCTTGTGAGAAACTG
AAGAAGGTTCTCAGTGCTAATCCCGAGGCACCTTTGAATATTGAATGCTT
AATG
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