CN188146

Overview
NameCN188146
Unique NameCN188146
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig295 contig Csv1_Contig295:433..1086. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 79/216 (36.57%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+FSD  +Q D+K  PF V  GP   P+I   Y GE + F   ++  M+L+ +K IAE+ L + V +  + +P YF D QR+A  DA  I+GL+ +R+ +E TA A+AYG+ K      ++ NV   D+G  +  V +   ++G  ++   + D  +GG DFD  +  HF  +FK ++K D++ N RA  RLR ACE+ K+ LS+  +  + I+ L
Sbjct:   79 RRFSDASVQEDMKLWPFKVIPGPGDKPMIVVTYKGEEKEFAAEEISSMVLTKMKEIAEAFLGSTVKNAVVTVPAYFNDSQRQATKDAGVISGLNVMRIINEPTAAAIAYGLDKKATSAGEK-NVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVHEFKRKHKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSL 293          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71L_RAT (Heat shock 70 kDa protein 1-like OS=Rattus norvegicus GN=Hspa1l PE=2 SV=2)

HSP 1 Score: 154.836 bits (390), Expect = 3.568e-37
Identity = 85/216 (39.35%), Postives = 125/216 (57.87%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DP +Q D+K  PF V     G P +   Y GE + F P ++  M+L+ +K  AE+ L  +V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+   D   + + +V   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   78 RKFNDPVVQSDMKLWPFQVINEA-GKPKVLVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHSVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL---DKGSHGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSL 289          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP76_PIG (Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 86/217 (39.63%), Postives = 125/217 (57.60%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPF-AVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DP +Q DLK  PF  V+EG  G P +   Y GE + F P ++  M+LS +K  AE+ L   V    I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ +    E    NV   D+G  +  V +     G  ++   + D  +GG DFD  L  HF  +F+ +++ D+S+N RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   78 RKFADPTVQSDLKHWPFQVVSEG--GKPKVRVSYRGEDKAFYPEEISSMVLSKMKETAEAYLGQPVRHAVITVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDRRGAGER---NVLIFDLGGGTFDVSVLTIDAGVFEVKATAGDTHLGGEDFDNRLVNHFMEEFRRKHRKDLSRNKRALRRLRTACERAKRTLSSSTQATLEIDSL 289          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71L_MACFA (Heat shock 70 kDa protein 1-like OS=Macaca fascicularis GN=HSPA1L PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 4.660e-37
Identity = 88/217 (40.55%), Postives = 125/217 (57.60%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAV-TEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DP +Q D+K  PF V  EG  G P +   Y GE + F P ++  M+L+ +K  AE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ K    E    +V   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   78 RKFNDPVVQSDMKLWPFQVINEG--GKPKVLVSYKGENKAFYPEEISSMVLTKMKETAEAFLGHPVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGLDKGGRGER---HVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSL 289          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP7A_DROME (Heat shock 70 kDa protein cognate 1 OS=Drosophila melanogaster GN=Hsc70-1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V    +G P I   Y GE + F P +V  M+L+ ++  AE+ L   V D  + +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+ K    E    NV   D+G  +  V +   + G  ++   + D  +GG DFD  L  HF  +F+ ++K D+ QN RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDATVQSDMKHWPFEVF-AENGKPRIRVEYKGERKSFYPEEVSSMVLTKMRETAEAYLGGTVTDAVVTVPAYFNDSQRQATKDAGAIAGLNVLRIINEPTAAAIAYGLDKQGTSER---NVLIFDLGGGTFDVSVLTIEDGIFEVKATAGDTHLGGEDFDNRLVNHFVQEFQRKHKKDLGQNKRALRRLRTACERAKRTLSSSTQASIEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP74_YEAST (Heat shock protein SSA4 OS=Saccharomyces cerevisiae GN=SSA4 PE=1 SV=3)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 82/216 (37.96%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F DPE+  D K  PF V +   G P++   Y GET+ FTP ++  M+L+ +K  AE+ L   V D  + +P YF D QR+A  DA TIAGL+ LR+ +E TA A+AYG+ K    E+   NV   D+G  +  V +    +G  ++   + D  +GG DFD  L    A +FK + K D++ N R+  RLR A E+ K+ LS++ +  + I+ L
Sbjct:   74 RKFDDPEVTNDAKHYPFKVID-KGGKPVVQVEYKGETKTFTPEEISSMILTKMKETAENFLGTEVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKSQKEH---NVLIFDLGGGTFDVSLLSIDEGVFEVKATAGDTHLGGEDFDSRLVNFLAEEFKRKNKKDLTTNQRSLRRLRTAAERAKRTLSSSAQTSIEIDSL 285          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP72_BOVIN (Heat shock-related 70 kDa protein 2 OS=Bos taurus GN=HSPA2 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 84/217 (38.71%), Postives = 125/217 (57.60%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPF-AVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF  V+EG  G P +   Y GE + F P ++  M+L+ +K IAE+ L   V    I +P YF D QR+A  DA TI GL+ LR+ +E TA A+AYG+ K      ++ NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  H A +FK ++K D++ N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   77 RKFEDATVQSDMKHWPFRVVSEG--GKPKVQVEYKGEIKTFFPEEISSMVLTKMKEIAEAYLGGKVQSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAYGLDKKGCAGGEK-NVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNSMVSHLAEEFKRKHKKDIAPNKRAVRRLRTACERAKRTLSSSTQASIEIDSL 290          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP71_PARBA (Heat shock 70 kDa protein 1 OS=Paracoccidioides brasiliensis (strain ATCC MYA-826 / Pb01) GN=HSP70-1 PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 83/216 (38.43%), Postives = 122/216 (56.48%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DPE+Q D+K  PF +T+   G P I   + GE + FTP  +  M     + IAES L   V +  + +P YF D QR+   DA  IAGL+ LR+ +E TA A+AYG+   D     + NV  +D+G  +  V +   ++G  ++   + D   GG DFD  L  HF  +FK ++K D+S NARA  RLR ACE+ K+ LS+  +  + I+ L
Sbjct:   73 RKFADPEVQADMKHFPFKITD-KGGNPKIQVEFRGEGKHFTPEGISSMFRRKKREIAESYLGGTVNNAVVTVPAYFNDSQRQVTKDAGLIAGLNVLRIINEPTAAAIAYGL---DKKAEGERNVLILDLGGGTFDVSLLTIEEGIFEVKSTAGDTHFGGEDFDNRLVNHFVNEFKRKHKKDLSSNARALRRLRTACERAKRTLSSAAQTSIEIDSL 284          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HSP70_ONCMY (Heat shock cognate 70 kDa protein OS=Oncorhynchus mykiss GN=hsc71 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 84/216 (38.89%), Postives = 123/216 (56.94%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F D  +Q D+K  PF V       P +   Y GET+ F P ++  M+L  +K IAE+ L   V +  + +P YF D QR+A  DA TI+GL+ LR+ +E TA A+AYG+   D     + NV   D+G  +  V I   + G  ++   + D  +GG DFD  +  HF A+FK +YK D+S N RA  RLR ACE+ K+ LS++ +A + I+ L
Sbjct:   76 RRFDDGVVQSDMKHWPFEVINDSTR-PKLQVEYKGETKSFYPEEISSMVLVKMKEIAEAYLGKTVNNAVVTVPAYFNDSQRQATKDAGTISGLNVLRIINEPTAAAIAYGL---DKKVGAERNVLIFDLGGGTFDVSILTIEDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRKYKKDISDNKRAVRRLRTACERAKRTLSSSTQASIEIDSL 287          
BLAST of CN188146 vs. ExPASy Swiss-Prot
Match: HS71L_MOUSE (Heat shock 70 kDa protein 1-like OS=Mus musculus GN=Hspa1l PE=2 SV=4)

HSP 1 Score: 154.066 bits (388), Expect = 6.087e-37
Identity = 85/216 (39.35%), Postives = 124/216 (57.41%), Query Frame = 1
Query:    4 RQFSDPELQRDLKSLPFAVTEGPDGYPLIHARYLGETRVFTPTQVLGMLLSNLKAIAESNLNAAVVDCCIGIPVYFTDLQRRAVIDAATIAGLHPLRLFHETTATALAYGIYKTDLPENDQLNVAFVDIGHASLQVCIAGFKKGQLKILGHSFDRSVGGRDFDEVLFQHFAAKFKEEYKIDVSQNARASLRLRVACEKLKKVLSANPEAPLNIECL 651
            R+F+DP +Q D+K  PF V     G P +   Y GE + F P ++  M+L+ +K  AE+ L   V +  I +P YF D QR+A  DA  IAGL+ LR+ +E TA A+AYG+   D   + + +V   D+G  +  V I     G  ++   + D  +GG DFD  L  HF  +FK ++K D+SQN RA  RLR ACE+ K+ LS++ +A L I+ L
Sbjct:   78 RKFNDPVVQSDMKLWPFQVINEA-GKPKVMVSYKGEKKAFYPEEISSMVLTKMKETAEAFLGHNVTNAVITVPAYFNDSQRQATKDAGVIAGLNVLRIINEPTAAAIAYGL---DKGSHGERHVLIFDLGGGTFDVSILTIDDGIFEVKATAGDTHLGGEDFDNRLVSHFVEEFKRKHKKDISQNKRAVRRLRTACERAKRTLSSSTQANLEIDSL 289          
The following BLAST results are available for this feature:
BLAST of CN188146 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP71_SOLLC3.568e-3736.57Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HS71L_RAT3.568e-3739.35Heat shock 70 kDa protein 1-like OS=Rattus norvegi... [more]
HSP76_PIG4.660e-3739.63Heat shock 70 kDa protein 6 OS=Sus scrofa GN=HSPA6... [more]
HS71L_MACFA4.660e-3740.55Heat shock 70 kDa protein 1-like OS=Macaca fascicu... [more]
HSP7A_DROME6.087e-3738.43Heat shock 70 kDa protein cognate 1 OS=Drosophila ... [more]
HSP74_YEAST6.087e-3737.96Heat shock protein SSA4 OS=Saccharomyces cerevisia... [more]
HSP72_BOVIN6.087e-3738.71Heat shock-related 70 kDa protein 2 OS=Bos taurus ... [more]
HSP71_PARBA6.087e-3738.43Heat shock 70 kDa protein 1 OS=Paracoccidioides br... [more]
HSP70_ONCMY6.087e-3738.89Heat shock cognate 70 kDa protein OS=Oncorhynchus ... [more]
HS71L_MOUSE6.087e-3739.35Heat shock 70 kDa protein 1-like OS=Mus musculus G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188146 ID=CN188146; Name=CN188146; organism=Citrus sinensis; type=EST; length=654bp
AGTCGACAATTCTCTGATCCTGAGCTGCAAAGGGATCTTAAGTCACTGCC
TTTTGCTGTAACTGAAGGTCCTGATGGTTACCCTTTAATACATGCACGAT
ATTTGGGTGAAACAAGAGTGTTTACTCCAACCCAAGTTTTGGGTATGTTG
CTCTCAAATTTAAAAGCCATAGCTGAGAGTAATTTGAATGCAGCAGTTGT
GGACTGCTGCATTGGAATTCCTGTTTATTTCACTGATCTCCAAAGAAGAG
CTGTTATAGATGCAGCCACAATTGCAGGATTGCATCCGCTTCGTTTGTTT
CATGAAACTACAGCCACAGCATTGGCTTATGGTATTTATAAGACAGATCT
ACCAGAAAATGACCAATTAAATGTTGCGTTTGTTGACATTGGGCATGCAA
GCTTGCAAGTATGCATAGCTGGTTTCAAGAAGGGTCAACTTAAGATATTG
GGTCATTCCTTTGATCGATCCGTGGGTGGTAGAGATTTTGATGAAGTTCT
ATTCCAGCATTTTGCAGCTAAGTTCAAGGAAGAGTACAAGATTGATGTCT
CCCAAAATGCTAGGGCTTCCCTCAGGTTGAGGGTTGCTTGTGAGAAACTG
AAGAAGGTTCTCAGTGCTAATCCCGAGGCACCTTTGAATATTGAATGCTT
AATG
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