CN188138

Overview
NameCN188138
Unique NameCN188138
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length634
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7513 contig Csv1_Contig7513:95..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_MUSDO (Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.243e-16
Identity = 46/125 (36.80%), Postives = 74/125 (59.20%), Query Frame = -2
Query:  214 EVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEI---DSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKKE 579
            EVAK+  +D  W +I   VY+VT FL +HP  +EV +    KDATE FED+GHS  AREMM+++ +GE+   + S+VP   KS P        E++   + ++ F++  L+  + + F + +K +
Sbjct:   13 EVAKNNTKDKNWFIIHNNVYDVTAFLNEHPGGEEVLIEQAGKDATEHFEDVGHSSDAREMMKQYKVGELVAEERSNVP--EKSEPTWNTEQKTEESSMKSWLMPFVLG-LVATLIYKFFFGTKSQ 134          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_RHIST (Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 7.224e-16
Identity = 47/123 (38.21%), Postives = 73/123 (59.35%), Query Frame = -2
Query:  229 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFGY 597
            K+    EV+KH  +   W+VI  KVY++T F+ +HP  +EV +    KDATE FED+GHSD AREM+E++ IG +D +S   K  +    +A   PE+   ++  L+ ++P L +  A  + Y
Sbjct:    4 KIFSLDEVSKHKTKSDLWVVIHNKVYDITRFVVEHPGGEEVLVDEGGKDATEAFEDIGHSDEAREMLEEYLIGSLDEAS-RTKEYNVNVIRAGELPEEKKGSS--LRIILPALAIIGALVYKY 123          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_CANTR (Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.232e-15
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = -2
Query:  217 QEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAF-AFGYFSKK 582
            +EVA+H   D  W++++GKVYN++ ++++HP  +EV L     DATE F+D+GHSD A E++EK +IG +  + +   + +    Q+ ++ ED+G     + F  P++ +G+   AFG +  K
Sbjct:   14 EEVAQHTTHDDLWVILNGKVYNISNYIDEHPGGEEVILDCAGTDATEAFDDIGHSDEAHEILEKLYIGNLKGAKIVEAKHA----QSFSTEEDSG-----INF--PLIAVGVFLAAFGVYYYK 125          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_MORAP (Cytochrome b5 OS=Mortierella alpina PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.745e-15
Identity = 45/115 (39.13%), Postives = 65/115 (56.52%), Query Frame = -2
Query:  268 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEI--DSSSVPAKR---KSTPPQQAVNSPEDTGSAAKILQFLV 597
            K     ++++H  +D  +L I GKVY+ T F+++HP  +EV +    +DATE FED+GHSD AR++M K  +GE   DSS  P  +    STP       P D+GS   +L   V
Sbjct:    5 KSFTLADLSQHTTKDSLYLAIHGKVYDCTGFIDEHPGGEEVLIDEAGRDATESFEDVGHSDEARDIMSKLLVGEFKTDSSEKPKAKSPSSSTPRPIPAAEPSDSGSLQYVLALAV 119          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_HUMAN (Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 6.116e-15
Identity = 41/101 (40.59%), Postives = 58/101 (57.43%), Query Frame = -2
Query:  295 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGS 597
            K    +E+ KH H    WL++  KVY++T FLE+HP  +EV       DATE+FED+GHS  AREM + F IGE+     P   K  PP+  + + + + S
Sbjct:   10 KYYTLEEIQKHNHSKSTWLILHHKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDVGHSTDAREMSKTFIIGELHPDDRPKLNK--PPETLITTIDSSSS 108          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5B_MOUSE (Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.988e-15
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  325 QEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQ 582
            +EVAK    +  W+VI G+VY++T FL +HP  +EV L     DATE FED+GHS  AREM+++++IG++  S +  K     P +
Sbjct:   26 EEVAKRNSAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPSDLKPKGDDKDPSK 111          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5B_RAT (Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.324e-14
Identity = 40/100 (40.00%), Postives = 60/100 (60.00%), Query Frame = -2
Query:  325 NSQKRMPKVLDF--QEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQ 618
            N Q   P V  +  +EVAK    +  W+VI G+VY++T FL +HP  +EV L     DATE FED+GHS  AREM+++++IG++  + +  K     P +
Sbjct:   12 NGQGSDPAVTYYRLEEVAKRNTAEETWMVIHGRVYDITRFLSEHPGGEEVLLEQAGADATESFEDVGHSPDAREMLKQYYIGDVHPNDLKPKDGDKDPSK 111          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5B_PONAB (Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 39/86 (45.35%), Postives = 55/86 (63.95%), Query Frame = -2
Query:  325 QEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQ 582
            +EVAK       WLVI G+VY+VT FL +HP  +EV L     DA+E FED+GHS  AREM+++++IG+I  S +  +  S  P +
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPENGSKDPSK 111          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5B_HUMAN (Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.035e-14
Identity = 45/124 (36.29%), Postives = 69/124 (55.65%), Query Frame = -2
Query:  211 QEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFGYFSKKEE 582
            +EVAK       WLVI G+VY+VT FL +HP  +EV L     DA+E FED+GHS  AREM+++++IG+I  S +  +  S  P     S  DT  +      L  +  + + F + Y++ + +
Sbjct:   26 EEVAKRNSLKELWLVIHGRVYDVTRFLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAREMLKQYYIGDIHPSDLKPESGSKDP-----SKNDTCKSCWAYWILPIIGAVLLGFLYRYYTSESK 144          
BLAST of CN188138 vs. ExPASy Swiss-Prot
Match: CYB5_HORSE (Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3)

HSP 1 Score: 77.411 bits (189), Expect = 6.762e-14
Identity = 40/102 (39.22%), Postives = 58/102 (56.86%), Query Frame = -2
Query:  292 KVLDFQEVAKHIHRDVGWLVISGKVYNVTPFLEDHPVVDEVFLAATEKDATEDFEDLGHSDSAREMMEKFHIGEIDSSSVPAKRKSTPPQQAVNSPEDTGSA 597
            K    +E+ KH H    WL++  KVY++T FLEDHP  +EV       DATE+FED+GHS  ARE+ + F IGE+       + K   P + + +  D+ S+
Sbjct:   10 KYYTLEEIKKHNHSKSTWLILHHKVYDLTKFLEDHPGGEEVLREQAGGDATENFEDIGHSTDARELSKTFIIGELHPDD---RSKIAKPVETLITTVDSNSS 108          
The following BLAST results are available for this feature:
BLAST of CN188138 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
CYB5_MUSDO3.243e-1636.80Cytochrome b5 OS=Musca domestica GN=Cyt-b5 PE=1 SV... [more]
CYB5_RHIST7.224e-1638.21Cytochrome b5 OS=Rhizopus stolonifer PE=2 SV=1[more]
CYB5_CANTR1.232e-1534.96Cytochrome b5 OS=Candida tropicalis GN=Cytb5 PE=3 ... [more]
CYB5_MORAP2.745e-1539.13Cytochrome b5 OS=Mortierella alpina PE=1 SV=1[more]
CYB5_HUMAN6.116e-1540.59Cytochrome b5 OS=Homo sapiens GN=CYB5A PE=1 SV=2[more]
CYB5B_MOUSE7.988e-1543.02Cytochrome b5 type B OS=Mus musculus GN=Cyb5b PE=1... [more]
CYB5B_RAT2.324e-1440.00Cytochrome b5 type B OS=Rattus norvegicus GN=Cyb5b... [more]
CYB5B_PONAB3.035e-1445.35Cytochrome b5 type B OS=Pongo abelii GN=CYB5B PE=2... [more]
CYB5B_HUMAN3.035e-1436.29Cytochrome b5 type B OS=Homo sapiens GN=CYB5B PE=1... [more]
CYB5_HORSE6.762e-1439.22Cytochrome b5 OS=Equus caballus GN=CYB5A PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188138 ID=CN188138; Name=CN188138; organism=Citrus sinensis; type=EST; length=634bp
GCGGCCATTTCACTGTATTACTGCTTCAGTATAACTTTTATCACATCCTT
CAACGAGGATGCACGAAGCACCCATTATTATTGCTACACATAGTTTAGTA
TCAAAACAAATCCTGATACCAAGTGCCAATTGAAGTTCTAATACTATAGG
ATAGGGAGTAAACTAACGAAGAGGTATCTGGTTCGGTTTTGCAATTCATA
CAATGCGTCACTCTTCTTTCTTGGAAAAATAACCGAAAGCAAATGCTATG
CCCAGGATCAACATCGGTACCAGGAACTGTAAAATCTTTGCTGCAGATCC
GGTGTCTTCGGGACTATTAACTGCTTGTTGGGGTGGAGTGGACTTCCTTT
TTGCTGGAACACTGGAGCTATCAATCTCACCAATGTGGAATTTTTCCATC
ATCTCTCTGGCAGAATCGCTGTGACCCAAATCTTCAAAGTCCTCTGTTGC
GTCCTTCTCAGTAGCAGCTAGGAAGACTTCATCGACAACAGGATGATCTT
CCAGAAACGGAGTCACATTATAGACCTTTCCAGAAATTACAAGCCAGCCA
ACATCTCTATGAATGTGCTTTGCCACCTCTTGAAAATCAAGAACTTTGGG
CATTCTTTTCTGGCTATTTCAGCTACTGCTCACG
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