CN188137

Overview
NameCN188137
Unique NameCN188137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188137_ssr5 microsatellite CN188137_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7513 contig Csv1_Contig7513:42..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA2_BRANA (Nitrate reductase [NADH], clone PBNBR1412 OS=Brassica napus GN=NIA2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.586e-14
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            AK++   EV KHN+ +  W+++ G +Y+ T FL+DHPGG + +L     D T++FE + HSD A++++E Y IGE+
Sbjct:  539 AKMYSMSEVRKHNSVESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA1_BRANA (Nitrate reductase [NADH], clone PBNBR1405 OS=Brassica napus GN=NIA1 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.989e-14
Identity = 31/76 (40.79%), Postives = 52/76 (68.42%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +K++   EV KHN+ +  W+++ G +Y+ T FL+DHPGG + +L     D T++FE + HSD A++++E Y IGE+
Sbjct:  539 SKMYSMSEVRKHNSAESAWIIVHGHIYDCTRFLKDHPGGSDSILINAGTDCTEEFEAI-HSDKAKKLLEDYRIGEL 613          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_CICIN (Nitrate reductase [NADH] OS=Cichorium intybus GN=NIA PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.822e-14
Identity = 32/88 (36.36%), Postives = 56/88 (63.64%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVN 372
            EV KHN+ D  W+V+ G +Y+ T FL+DHPGG + +L     D T++F+ + HSD A++++E+Y +GE+ +    +    + P  +V+
Sbjct:  541 EVKKHNSADSAWIVVHGHIYDCTSFLKDHPGGSDSILLNAGTDCTEEFDAI-HSDKAKKLLEEYRVGELITMGYSSDSAASSPNNSVH 627          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_CUCMA (Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPM 426
            +  +   EV KHN+    W+++ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A++M+E Y IGE+ ++   +         + NSP ++   A     L P+
Sbjct:  543 SNTYTLSEVKKHNSPQSAWIIVHGHVYDCTRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELITTGYAS-------DSSSNSPNNSTHGASNFSHLAPI 647          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_PETHY (Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 37/107 (34.58%), Postives = 62/107 (57.94%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKIL 408
            +K++   EV KHN+ D  W+++ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A++++E + IGE+ ++       YT      NS   + S +  L
Sbjct:  535 SKMYSMSEVKKHNSADSAWIIVHGHVYDATRFLKDHPGGIDSILINAGTDCTEEFDAI-HSDKAKKLLEDFRIGELITTG------YTSDSSPNNSVHGSSSFSGFL 634          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_BETVE (Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN=NIA1 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 36/106 (33.96%), Postives = 61/106 (57.55%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKI 405
            +K+    EV KHN+ +  W+++ G +Y+ T FL+DHPGG + +L     D T++F+ + HSD A++M+E Y IGE+ ++   +      P   V+   +T   A I
Sbjct:  528 SKMFSMSEVKKHNSAESAWIIVHGHIYDCTHFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGELITTGYVS----DSPNSTVHGASNTSHLAPI 628          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NB5R4_XENTR (Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN=cyb5r4 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 33/89 (37.08%), Postives = 55/89 (61.80%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQQAVN 372
            +E+A+HN ++DCW+ I G VYN+TP++E HPGG+E L+ A  +D TD F+ V    +   M+++  IG +    V   ++ T  +  +N
Sbjct:   60 EELAQHNKKEDCWICIRGMVYNITPYMEYHPGGEEELMKAAGRDGTDLFDQVHRWVNYESMLKECLIGRMAIKHVSISKEVTSVENKMN 148          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: FAD5B_DICDI (Delta(5) fatty acid desaturase B OS=Dictyostelium discoideum GN=fadB PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.743e-13
Identity = 34/89 (38.20%), Postives = 57/89 (64.04%), Query Frame = 1
Query:   70 NSQKRMAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDV-GHSDSAREMMEKYHIGEIDSSSVP 333
            N  K   K++ + EV+KHN ++D W+++ GKVYN+T ++  HPGG+++LL +  +DAT+ FE     +D    ++++Y IG I S   P
Sbjct:    6 NENKEKLKLYTWDEVSKHNQKNDLWIIVDGKVYNITKWVPLHPGGEDILLLSAGRDATNLFESYHPMTDKHYSLIKQYEIGYISSYEHP 94          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA1_TOBAC (Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN=NIA1 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.276e-13
Identity = 29/76 (38.16%), Postives = 53/76 (69.74%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +K++   EV KH++ D  W+++ G +Y+ T FL+DHPGG + +L     D T++F+ + HSD A++++E++ IGE+
Sbjct:  531 SKMYSMSEVRKHSSADSAWIIVHGHIYDATRFLKDHPGGSDSILINAGTDCTEEFDAI-HSDKAKKLLEEFRIGEL 605          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA2_PHAVU (Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris GN=NIA2 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.972e-13
Identity = 32/76 (42.11%), Postives = 51/76 (67.11%), Query Frame = 1
Query:   88 AKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +K+    EV KH++ D  W+++ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A++M+E Y IGE+
Sbjct:  513 SKMFSVSEVKKHSSPDSAWIIVHGHVYDCTRFLKDHPGGTDSILINAGTDCTEEFDAI-HSDKAKKMLEDYRIGEL 587          
The following BLAST results are available for this feature:
BLAST of CN188137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NIA2_BRANA4.586e-1442.11Nitrate reductase [NADH], clone PBNBR1412 OS=Brass... [more]
NIA1_BRANA5.989e-1440.79Nitrate reductase [NADH], clone PBNBR1405 OS=Brass... [more]
NIA_CICIN7.822e-1436.36Nitrate reductase [NADH] OS=Cichorium intybus GN=N... [more]
NIA_CUCMA1.022e-1332.74Nitrate reductase [NADH] OS=Cucurbita maxima PE=2 ... [more]
NIA_PETHY1.334e-1334.58Nitrate reductase [NADH] OS=Petunia hybrida GN=NIA... [more]
NIA_BETVE1.334e-1333.96Nitrate reductase [NAD(P)H] OS=Betula verrucosa GN... [more]
NB5R4_XENTR1.743e-1337.08Cytochrome b5 reductase 4 OS=Xenopus tropicalis GN... [more]
FAD5B_DICDI1.743e-1338.20Delta(5) fatty acid desaturase B OS=Dictyostelium ... [more]
NIA1_TOBAC2.276e-1338.16Nitrate reductase [NADH] 1 OS=Nicotiana tabacum GN... [more]
NIA2_PHAVU2.972e-1342.11Nitrate reductase [NADH] 2 OS=Phaseolus vulgaris G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188137 ID=CN188137; Name=CN188137; organism=Citrus sinensis; type=EST; length=686bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATAATTCTGATT
CTGCGTGAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
TGGTGATGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAA
AGATTCTACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAA
AAGTTATACTGAAGCAATAATACAGTGAAATTGAAC
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