CN188137

Overview
NameCN188137
Unique NameCN188137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188137_ssr5 microsatellite CN188137_ssr5:5..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7513 contig Csv1_Contig7513:42..727. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_ASPNG (Nitrate reductase [NADPH] OS=Aspergillus niger GN=niaD PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.321e-12
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   91 KVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSSVPAKRKYTPPQ 360
            ++ D QE  K+++ +  W +++G+VY+ T FLE HPGG + ++++   D +++F  + H+ +A+ MM  YHIG +D +S+ A +    PQ
Sbjct:  515 RIIDLQEFKKNSSDEKPWFIVNGEVYDGTAFLEGHPGGAQSIISSAGIDVSEEFLAI-HTQTAKAMMPDYHIGTMDKASLEALKNDNAPQ 603          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA1_MAIZE (Nitrate reductase [NADH] (Fragment) OS=Zea mays PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.249e-11
Identity = 30/77 (38.96%), Postives = 49/77 (63.64%), Query Frame = 1
Query:   85 MAKVHDFQEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            + K     EV KH +++  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HSD A+ +++ Y IGE+
Sbjct:  248 VGKEFTMSEVRKHASQESAWIVVHGHVYDCTKFLKDHPGGADSILINAGTDCTEEFDAI-HSDKAKALLDTYRIGEL 323          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NB5R4_BOVIN (Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.631e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D TD F+ V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTDLFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA_FUSOX (Nitrate reductase [NADPH] OS=Fusarium oxysporum GN=NIA PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 29/74 (39.19%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEIDSSS 327
            +E+  H+  ++ W V+ G+VY+ TP+L  HPGG   +  A  +DAT++F  + HS++A+ M+  YHIG +D  S
Sbjct:  552 EELKAHSGEEEPWFVVKGEVYDGTPYLSGHPGGAASIFGAAGQDATEEFMAI-HSENAKAMLPTYHIGTLDEES 624          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NB5R4_RAT (Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=Cyb5r4 PE=1 SV=2)

HSP 1 Score: 69.3218 bits (168), Expect = 2.130e-11
Identity = 29/70 (41.43%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D TD F +V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NIA7_HORVU (Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=NAR-7 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            EV +H ++D  W+V+ G VY+ T FL+DHPGG + +L     D T++F+ + HS  AR ++E Y +GE+
Sbjct:  522 EVRRHASKDSAWIVVHGHVYDCTAFLKDHPGGADSILINAGSDCTEEFDAI-HSAKARGLLEMYRVGEL 589          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: FAD5C_DICDI (Probable Delta(5) fatty acid desaturase C OS=Dictyostelium discoideum GN=DDB_G0294553 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.782e-11
Identity = 31/90 (34.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   70 NSQKRMAKVHDFQEVAKHNNRDD-CWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDV-GHSDSAREMMEKYHIGEIDSSSVP 333
            N +K   K++ ++E++KHN  ++  W+ I G VY++T F++ HPGG++VL+ A  +D T+ FE     +D   +M+++Y IG++ +   P
Sbjct:    3 NEKKLFKKLYSWKEISKHNTIENGIWISIDGLVYDITKFIKHHPGGEQVLILAAGRDVTNLFESYHPMTDLPSKMLKQYEIGQVSTMEFP 92          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: CYB2_YEAST (Cytochrome b2, mitochondrial OS=Saccharomyces cerevisiae GN=CYB2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.633e-11
Identity = 42/126 (33.33%), Postives = 63/126 (50.00%), Query Frame = 1
Query:  109 EVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKY-----HIGEIDSSSVPAKRKYTPPQQAVNSPEDTGSAAKILQFLVPMLILGIAFAFRYFSKK 471
            EVAKHN  DDCW+VI+G VY++T FL +HPGG +V+     KD T  FE +     A  +++KY      +G +  S  P      PP     + ED     ++   L P+  +   + F Y + +
Sbjct:   95 EVAKHNKPDDCWVVINGYVYDLTRFLPNHPGGQDVIKFNAGKDVTAIFEPL----HAPNVIDKYIAPEKKLGPLQGSMPP--ELVCPPYAPGETKEDIARKEQLKSLLPPLDNIINLYDFEYLASQ 214          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NB5R4_HUMAN (Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R4 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.745e-11
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN +DDCW+ I G VYNV+P++E HPGG++ L+ A   D T+ F+ V    +   M+++  +G +
Sbjct:   60 EELKKHNKKDDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGSDGTELFDQVHRWVNYESMLKECLVGRM 129          
BLAST of CN188137 vs. ExPASy Swiss-Prot
Match: NB5R4_MOUSE (Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r4 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.198e-11
Identity = 28/70 (40.00%), Postives = 46/70 (65.71%), Query Frame = 1
Query:  106 QEVAKHNNRDDCWLVISGKVYNVTPFLEDHPGGDEVLLAATEKDATDDFEDVGHSDSAREMMEKYHIGEI 315
            +E+ KHN ++DCW+ I G VYNV+P++E HPGG++ L+ A   D TD F +V    +   M+++  +G +
Sbjct:   60 EELKKHNKKEDCWICIRGFVYNVSPYMEYHPGGEDELMRAAGADGTDLFNEVHRWVNYESMLKECLVGRM 129          
The following BLAST results are available for this feature:
BLAST of CN188137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
NIA_ASPNG7.321e-1234.44Nitrate reductase [NADPH] OS=Aspergillus niger GN=... [more]
NIA1_MAIZE1.249e-1138.96Nitrate reductase [NADH] (Fragment) OS=Zea mays PE... [more]
NB5R4_BOVIN1.631e-1141.43Cytochrome b5 reductase 4 OS=Bos taurus GN=CYB5R4 ... [more]
NIA_FUSOX2.130e-1139.19Nitrate reductase [NADPH] OS=Fusarium oxysporum GN... [more]
NB5R4_RAT2.130e-1141.43Cytochrome b5 reductase 4 OS=Rattus norvegicus GN=... [more]
NIA7_HORVU2.782e-1142.03Nitrate reductase [NAD(P)H] OS=Hordeum vulgare GN=... [more]
FAD5C_DICDI2.782e-1134.44Probable Delta(5) fatty acid desaturase C OS=Dicty... [more]
CYB2_YEAST3.633e-1133.33Cytochrome b2, mitochondrial OS=Saccharomyces cere... [more]
NB5R4_HUMAN4.745e-1140.00Cytochrome b5 reductase 4 OS=Homo sapiens GN=CYB5R... [more]
NB5R4_MOUSE6.198e-1140.00Cytochrome b5 reductase 4 OS=Mus musculus GN=Cyb5r... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188137 ID=CN188137; Name=CN188137; organism=Citrus sinensis; type=EST; length=686bp
GAGGGTCTGTCTGTCTGTCTGTCCGTCTGCAAGCTCCTATAATTCTGATT
CTGCGTGAGCAGTAGCTGAAATAGCCAGAAAAGAATGGCCAAAGTTCATG
ATTTTCAAGAGGTGGCAAAGCACAATAATAGAGATGATTGTTGGCTTGTA
ATTTCTGGAAAGGTCTATAATGTGACTCCGTTTCTCGAAGATCATCCTGG
TGGTGATGAAGTCTTGCTAGCTGCTACTGAGAAGGATGCAACAGACGACT
TTGAAGATGTGGGTCACAGCGATTCTGCCAGAGAGATGATGGAAAAATAC
CACATTGGTGAGATTGATAGCTCCAGTGTTCCAGCAAAAAGGAAGTACAC
TCCACCCCAACAAGCAGTTAATAGTCCCGAAGACACTGGATCTGCAGCAA
AGATTCTACAGTTCCTGGTACCGATGTTGATCCTGGGCATAGCATTTGCT
TTCCGTTACTTTTCCAAGAAAGAAGAGTGAAGCATTGTATGAATTGCAAA
ACCGAACCAGATACCTCTTCGTTAGTTTACTACCTATCCTATAGTATTAG
AACTTCAATTGGCACTTGGTATCAGGATTTGTTTTGATACTAAACTATGT
GTAGCAATAATAATTGGTGCTTCGTGCATCCTCGTTGAAGGATGTGATAA
AAGTTATACTGAAGCAATAATACAGTGAAATTGAAC
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