CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_MESAU (SUMO-conjugating enzyme UBC9 OS=Mesocricetus auratus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  +   IQ LL +PN   PA +EA  ++ +N+ EY +R R
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITINQLFIGIQELLNEPNIQEPAQAEAYTIYCQNRVEYEKRFR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 440
            L R    L ++P  G S G   DN +  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 440
            L R    L ++P  G S G   DN +  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 440
            L R    L ++P  G S G   DN +  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.267e-25
Identity = 57/155 (36.77%), Postives = 90/155 (58.06%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKR-EYNRRVREIVEQS 440
            L R    L ++P  G S G   DN +  W  +I GP DT ++GG FK  L F +DYP +PP ++F++ ++HPN+  +G +C+ IL             + +W PI+ V  I+ S+ S+L DPN +SPAN +AA+ + E++  E+ R+V   V +S
Sbjct:   10 LRRQLAELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKS 164          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 56/137 (40.88%), Postives = 84/137 (61.31%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            KRL ++   L      GIS  P+ +++  W   I G   T ++   +KL+L+F   YP   PTV+FV+  FHPN+ + G+ICLDIL+++WS +YDV  IL S+QSLL +PN  SP N  AA ++ +N+  Y + + E
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELW-QNQTAYKKHLHE 168          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2C_BOVIN (Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN=UBE2C PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:    6 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            P  KRL ++   L      GIS  P+ +++  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E
Sbjct:   30 PVGKRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.573e-25
Identity = 52/136 (38.24%), Postives = 81/136 (59.56%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            KR+ ++   +  DPP   S  P+ +++  W + I GP  + ++GG F L + F+ +YP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  + +N+ E++R  R
Sbjct:   89 KRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIAR 224          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 7.279e-25
Identity = 51/113 (45.13%), Postives = 76/113 (67.26%), Query Frame = 3
Query:   87 NSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            N+I  W AVI GPD TP++GG F L+++F  DYP KPP   F + ++HPNI  +GSIC++IL+++W+P   V  +L SI  LL  PNP+ P   E  ++F  N+ ++++R RE
Sbjct:   34 NNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRARE 146          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2C_MOUSE (Ubiquitin-conjugating enzyme E2 C OS=Mus musculus GN=Ube2c PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.242e-24
Identity = 55/140 (39.29%), Postives = 86/140 (61.43%), Query Frame = 3
Query:    6 PARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            P  KRL ++   L      GIS  P+ +++  W   I G   T ++   +KL+L+F   YP   PTV+F++  +HPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN +SP N+ AA ++ +N   + + ++E
Sbjct:   30 PVGKRLQQELMILMTSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKDKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBC9_MESAU4.267e-2537.93SUMO-conjugating enzyme UBC9 OS=Mesocricetus aurat... [more]
UB2G1_RAT4.267e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE4.267e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_MACFA4.267e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UB2G1_HUMAN4.267e-2536.77Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UBE2C_XENLA5.573e-2540.88Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]
UBE2C_BOVIN5.573e-2539.29Ubiquitin-conjugating enzyme E2 C OS=Bos taurus GN... [more]
UBCD2_DROME5.573e-2538.24Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
UBC31_ARATH7.279e-2545.13Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBE2C_MOUSE1.242e-2439.29Ubiquitin-conjugating enzyme E2 C OS=Mus musculus ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
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