CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2SA_XENLA (Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus laevis GN=ube2s-A PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 49/136 (36.03%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   27 RDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 434
            ++   L  DPP GI   P +  +      I GP+ TP+ GG F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W+    +  +L +I+ LL  PNP S  N EA R+  EN  EY  R R + E
Sbjct:   18 KEVTTLTADPPDGIKVFPNEEDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFHPNVGPNGEICVNVLKRDWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTE 153          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2S_DROMO (Ubiquitin-conjugating enzyme E2 S OS=Drosophila mojavensis GN=GI11085 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 48/140 (34.29%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 434
            +++M++ + ++  PP GI     ++ +    A+I GP  TP+  G F++ L  ++D+P  PP   F++++FHPN+ A+G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y++R R + E
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVAANGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 431
            ++K L+ + K LQ++P  G      D   +  W   IFGP +T ++GG FK  L+F  DYP  PP  RF+++M+HPNIY  G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ M+ + K      REY   +R+ V
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 60/161 (37.27%), Postives = 88/161 (54.66%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIML-WNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENK------REYNRRVREIV 431
            ++K L+ + K LQ++P  G      D   +  W   IFGP +T ++GG FK  L+F  DYP  PP  RF+++M+HPNIY  G +C+ IL               +W+P  +V  IL S+ SLL +PN  SPAN +A+ M+ + K      REY   +R+ V
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQV 169          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2S_DROGR (Ubiquitin-conjugating enzyme E2 S OS=Drosophila grimshawi GN=GH12079 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 47/140 (33.57%), Postives = 83/140 (59.29%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 434
            +++M++ + ++  PP GI     ++ +    A+I GP  TP+  G F++ L  ++D+P  PP   F++++FHPN+ ++G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y++R R + E
Sbjct:   17 RQVMKELQDMESTPPEGIKVLINESDVTDIQALIDGPAGTPYAVGIFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC22_ARATH (Ubiquitin carrier protein E2 22 OS=Arabidopsis thaliana GN=UBC22 PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.982e-22
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            K+L ++ K L + PP GI     D       A I GP  TP++ G F++ L  + D+P+ PP   F++++FHPN+ ++G IC++ L+  W+P   +  +L+ ++ LL +P P S  N +A +M  EN  EY R  R
Sbjct:   13 KQLAKELKSLDESPPDGIKVVVNDEDFSQICADIEGPVGTPYENGLFRMKLALSHDFPHSPPKGYFMTKIFHPNVASNGEICVNTLKKDWNPSLGLRHVLSVVRCLLIEPFPESALNEQAGKMLLENYDEYARHAR 148          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.589e-22
Identity = 53/140 (37.86%), Postives = 79/140 (56.43%), Query Frame = 3
Query:    3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            +PA+ RL +D + L+  P   ++    DN   +   +I  PD+  + GG F+ T  F E YP  PP V   +++FHPNI   G ICL+IL+  WSP  D+  I+  + SL  +PN N P N EAA + +++K E+   VR
Sbjct:   31 SPAKLRLQKDIEELELPPTVRVNIISLDNHKEMSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKDKLEFGNLVR 170          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2S_DROVI (Ubiquitin-conjugating enzyme E2 S OS=Drosophila virilis GN=GJ15767 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.381e-22
Identity = 47/140 (33.57%), Postives = 82/140 (58.57%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 434
            +++M++ + ++  PP GI     ++ +    A I GP  TP+  G F++ L  ++D+P  PP   F++++FHPN+ ++G IC++ L+  W P   +  IL +I+ LL  PNP S  N EA +M  E   +Y++R R + E
Sbjct:   17 RQVMKELQDMETTPPEGIKVLINESDVTDIQAFIDGPAGTPYAVGVFRVKLTLSKDFPQTPPKAYFLTKIFHPNVASNGEICVNTLKKDWKPDLGIKHILLTIKCLLIVPNPESALNEEAGKMLLERYDDYSQRARMMTE 156          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB2SC_XENLA (Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus laevis GN=ube2s-C PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 3.381e-22
Identity = 49/140 (35.00%), Postives = 77/140 (55.00%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVE 434
            +R+ ++   L  DPP GI   P +  I      I GP+ TP+  G F++ L   +D+P  PP   F++++FHPN+  +G IC+++L+  W     +  +L +I+ LL  PNP S  N EA R+  EN  EY  R + + E
Sbjct:   14 RRVYKEVSTLTSDPPEGIKIIPNEEDITDVQVHIEGPEGTPYAAGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYASRAKLMTE 153          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC1_YEAST (Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharomyces cerevisiae GN=UBC1 PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 48/135 (35.56%), Postives = 85/135 (62.96%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNR 413
            KR+M++ + ++ DP A I+     ++ I        GP  TP++GG F + ++   +YP KPP ++F ++++HPNI +  G+ICLDIL+N WSP+  + + L S+Q+LL  P PN P ++E A+ +  ++  +N+
Sbjct:    5 KRIMKEIQAVKDDPAAHITLEFVSESDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILKNAWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UB2SA_XENLA8.897e-2336.03Ubiquitin-conjugating enzyme E2 S-A OS=Xenopus lae... [more]
UBE2S_DROMO1.162e-2234.29Ubiquitin-conjugating enzyme E2 S OS=Drosophila mo... [more]
UB2R1_MOUSE1.162e-2237.27Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN1.162e-2237.27Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBE2S_DROGR1.982e-2233.57Ubiquitin-conjugating enzyme E2 S OS=Drosophila gr... [more]
UBC22_ARATH1.982e-2235.29Ubiquitin carrier protein E2 22 OS=Arabidopsis tha... [more]
UBC12_CANGA2.589e-2237.86NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBE2S_DROVI3.381e-2233.57Ubiquitin-conjugating enzyme E2 S OS=Drosophila vi... [more]
UB2SC_XENLA3.381e-2235.00Ubiquitin-conjugating enzyme E2 S-C OS=Xenopus lae... [more]
UBC1_YEAST4.416e-2235.56Ubiquitin-conjugating enzyme E2-24 kDa OS=Saccharo... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
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