CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 8.328e-21
Identity = 46/142 (32.39%), Postives = 83/142 (58.45%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 437
            +RL +++  L++ P   I     D+++  W     GP D+ + GG F  +L+F  DYP +PPT+ F +R++HPN  ++G++CL IL+ Q + P   + ++L  I  LL +PNP+ P  +  A  +  ++  +++  R+ VEQ
Sbjct:   10 RRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQ 151          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.855e-20
Identity = 53/142 (37.32%), Postives = 77/142 (54.23%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGI----SGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            AR RL RD   L   P   +    S    D S      VI  PD+  ++ G+    L F E YP +PP V  + ++FHPNI   G++CL+IL+  WSP  D+ +I+T +  L  +PNPN P N +AA++  E ++E+   VR
Sbjct:   28 ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC27_ARATH (Ubiquitin carrier protein E2 27 OS=Arabidopsis thaliana GN=UBC27 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 5.398e-20
Identity = 48/133 (36.09%), Postives = 79/133 (59.40%), Query Frame = 3
Query:   24 MRDFKRLQQD--------PPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSEN 395
            M DF R+Q++          +GI   P+ +++      I GP  TP++GGTF++ +   + YP +PP ++F ++++HPNI +  G+ICLDIL++QWSP   +   L SIQ+LL  P P  P ++  A  + +N
Sbjct:    1 MIDFSRIQKELQDCERNQDSSGIRVCPKSDNLTRLTGTIPGPIGTPYEGGTFQIDITMPDGYPFEPPKMQFSTKVWHPNISSQSGAICLDILKDQWSPALTLKTALVSIQALLSAPEPKDPQDAVVAEQYMKN 133          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2H_MOUSE (Ubiquitin-conjugating enzyme E2 H OS=Mus musculus GN=Ube2h PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  117 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 452
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++++E +++  T +
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 152          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2H_HUMAN (Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens GN=UBE2H PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  117 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 452
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++++E +++  T +
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 152          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2H_BOVIN (Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN=UBE2H PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 7.050e-20
Identity = 41/114 (35.96%), Postives = 72/114 (63.16%), Query Frame = 3
Query:  117 FGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD 452
            +GP  TP++GG +K+ +   + YP K P++ F++++FHPNI  A G++CLD++   W+ +YD+  I  S +  LL  PNP  P N +AA M+     EY ++++E +++  T +
Sbjct:   39 YGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQTWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYATEE 152          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.051e-19
Identity = 43/139 (30.94%), Postives = 80/139 (57.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            A+ R+ +D   L   P    +  P  N ++ +  +I  PD+  +  G F    +   +YP++PP V+  ++++HPNI  DG++CL+IL+  W+P+ ++ +I+  +Q L  +PNP  P N EAA +   N+R++   V++
Sbjct:   27 AQLRIQKDINELNL-PNTCATDFPDPNDLLNFKLII-SPDEGFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKK 163          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC6_ARATH (Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis thaliana GN=UBC6 PE=2 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 3.499e-19
Identity = 45/147 (30.61%), Postives = 84/147 (57.14%), Query Frame = 3
Query:    3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAILTS-IQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 437
            +P+++R M   K +  D          ++ + ++     GP D+ + GG +K+ ++  E YP K P+V FV++++HPN+  + G++CLD++   WSP++D+  +  S +  LL  PNP+ P N EAA +   ++  Y  +V+E  E+
Sbjct:    3 SPSKRREMDMMKLMMSDYKVDTV----NDDLQMFYVTFHGPTDSLYQGGVWKIKVELPEAYPYKSPSVGFVNKIYHPNVDESSGAVCLDVINQTWSPMFDLINVFESFLPQLLLYPNPSDPFNGEAASLLMRDRAAYELKVKEYCEK 145          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: Y1A1_ENCCU (Probable ubiquitin-conjugating enzyme E2 ECU01_1010 OS=Encephalitozoon cuniculi GN=ECU01_1010 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 45/136 (33.09%), Postives = 76/136 (55.88%), Query Frame = 3
Query:   72 GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--------------NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 437
            G+ ++    +W+       D+ + G   K  ++F   YP +PPT++FVS+MFHPNIY DG +C+ IL+              ++W+P+ ++  I+ SI  +L  PN +SPAN +A+ M+ +N  EY + V  I  +
Sbjct:   58 GSMENRDYKVWDIYFTLGGDSLYAGRILKAVMKFPSSYPLRPPTLKFVSKMFHPNIYEDGKMCISILEEDKQQDSSVFGDPKDKWTPVQNIRTIVMSIVVILNSPNISSPANVDASVMYRDNPEEYIKEVIRIARE 193          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC5_ARATH (Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana GN=UBC5 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 4.570e-19
Identity = 40/108 (37.04%), Postives = 70/108 (64.81%), Query Frame = 3
Query:  120 GPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 437
            GP D+ ++GG +K+ ++  + YP K P+V F+++++HPN+    GS+CLD++   WSP++D+  +  T +  LL  PNP+ P N EAA +   ++  Y +RV+E  E+
Sbjct:   38 GPKDSIYEGGVWKIRVELPDAYPYKSPSVGFITKIYHPNVDEMSGSVCLDVINQTWSPMFDLVNVFETFLPQLLLYPNPSDPLNGEAAALMMRDRPTYEQRVKEYCEK 145          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBC14_SCHPO8.328e-2132.39Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBC12_YEAST1.855e-2037.32NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC27_ARATH5.398e-2036.09Ubiquitin carrier protein E2 27 OS=Arabidopsis tha... [more]
UBE2H_MOUSE7.050e-2035.96Ubiquitin-conjugating enzyme E2 H OS=Mus musculus ... [more]
UBE2H_HUMAN7.050e-2035.96Ubiquitin-conjugating enzyme E2 H OS=Homo sapiens ... [more]
UBE2H_BOVIN7.050e-2035.96Ubiquitin-conjugating enzyme E2 H OS=Bos taurus GN... [more]
UBC12_DROME2.051e-1930.94NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC6_ARATH3.499e-1930.61Ubiquitin-conjugating enzyme E2 6 OS=Arabidopsis t... [more]
Y1A1_ENCCU4.570e-1933.09Probable ubiquitin-conjugating enzyme E2 ECU01_101... [more]
UBC5_ARATH4.570e-1937.04Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
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