CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            L RDF  L+++   GI+  P    +M W   I G  ++ W G  F+LT+ FT +Y   PP V+F++  FHPN+    G  C+D L N  +W+  Y +++IL ++Q +L +P   +P N EAAR+  +++  Y   +R
Sbjct:    9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   30 AQLRIQKDINELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+ R+ +D   L       I  +  D+  +L   ++  PD+  + GG F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   30 AQLRIQKDITELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18
Identity = 45/140 (32.14%), Postives = 82/140 (58.57%), Query Frame = 3
Query:    3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            +PA+ R+ +D   L+   P+ +S +  D   +    +   PD+  + GG FK  +Q  ++YP+ PP V+ +++++HPNI  +G++CL+IL+  W+P+ ++ +IL  +Q L   PN   P N EAA    ++ + +  RVR
Sbjct:   22 SPAQIRIQKDVTDLEI--PSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18
Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+ R+ +D   L       IS +  D+  +L   ++  PD+  +  G F  + +  + YP+ PP V+  + ++HPNI  +G++CL+IL+  W P+  + +I+  +Q L  +PNP  P N EAA +   N+R + + V+
Sbjct:   30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17
Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 3
Query:  120 GPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 431
            GP +TP+ GG +K+ ++   +YP K P++ FV+R+FHPNI    GS+CLD++   WSP++D+  I    +  LL  PN + P N EAA +       Y  +VR+ +
Sbjct:   38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYI 143          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 3
Query:    9 ARKRLMRDFK---RLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 392
            A  R+ R+FK   R ++     I     ++S       I GP DTP++GG F L ++  E YP  PP VRF++R++HPNI +  G+ICLDIL++ W+    +  +L S+Q+LL    P+ P ++  A  F +
Sbjct:    5 AVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17
Identity = 40/115 (34.78%), Postives = 70/115 (60.87%), Query Frame = 3
Query:   84 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            D +I LW   I GP+++ ++   F+L ++ + DYP   P V+F++ + H N+   G ICL+IL+   W+   ++ +I+ SI  LL  PNP  P NSE A ++  +K  Y++++R+
Sbjct:   33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRD 147          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBE2U_HUMAN5.052e-1835.04Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens ... [more]
UBC12_XENTR5.052e-1830.43NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA6.598e-1830.43NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_SCHPO6.598e-1832.14NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_MOUSE8.618e-1830.43NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN8.618e-1830.43NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN8.618e-1830.43NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC8_SCHPO1.920e-1738.68Ubiquitin-conjugating enzyme E2 8 OS=Schizosacchar... [more]
UBCD4_DROME3.275e-1736.36Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophi... [more]
UBC1_MIMIV3.275e-1734.78Probable ubiquitin-conjugating enzyme E2 L460 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
back to top