CK939327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2U_HUMAN (Ubiquitin-conjugating enzyme E2 U OS=Homo sapiens GN=UBE2U PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18 Identity = 48/137 (35.04%), Postives = 78/137 (56.93%), Query Frame = 3 Query: 21 LMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 L RDF L+++ GI+ P +M W I G ++ W G F+LT+ FT +Y PP V+F++ FHPN+ G C+D L N +W+ Y +++IL ++Q +L +P +P N EAAR+ +++ Y +R Sbjct: 9 LHRDFCDLKENNYKGITAKPVSEDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILR 145
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 5.052e-18 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 A+ R+ +D L I + D+ +L ++ PD+ + GG F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+ Sbjct: 30 AQLRIQKDINELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 A+ R+ +D L I + D+ +L ++ PD+ + GG F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+ Sbjct: 30 AQLRIQKDITELNLPKTCEIEFSDHDD--LLNFKLVICPDEGFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 6.598e-18 Identity = 45/140 (32.14%), Postives = 82/140 (58.57%), Query Frame = 3 Query: 3 TPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 +PA+ R+ +D L+ P+ +S + D + + PD+ + GG FK +Q ++YP+ PP V+ +++++HPNI +G++CL+IL+ W+P+ ++ +IL +Q L PN P N EAA ++ + + RVR Sbjct: 22 SPAQIRIQKDVTDLEI--PSTMSTSWPDPIKLNVLHLEIRPDEGYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVR 159
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 A+ R+ +D L IS + D+ +L ++ PD+ + G F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+ Sbjct: 30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 A+ R+ +D L IS + D+ +L ++ PD+ + G F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+ Sbjct: 30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1) HSP 1 Score: 89.7373 bits (221), Expect = 8.618e-18 Identity = 42/138 (30.43%), Postives = 76/138 (55.07%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 A+ R+ +D L IS + D+ +L ++ PD+ + G F + + + YP+ PP V+ + ++HPNI +G++CL+IL+ W P+ + +I+ +Q L +PNP P N EAA + N+R + + V+ Sbjct: 30 AQLRIQKDINELNLPKTCDISFSDPDD--LLNFKLVICPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQ 165
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC8_SCHPO (Ubiquitin-conjugating enzyme E2 8 OS=Schizosaccharomyces pombe GN=ubc8 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.920e-17 Identity = 41/106 (38.68%), Postives = 64/106 (60.38%), Query Frame = 3 Query: 120 GPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNI-YADGSICLDILQNQWSPIYDVAAIL-TSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIV 431 GP +TP+ GG +K+ ++ +YP K P++ FV+R+FHPNI GS+CLD++ WSP++D+ I + LL PN + P N EAA + Y +VR+ + Sbjct: 38 GPSETPYSGGIWKVHVELPSEYPWKSPSIGFVNRIFHPNIDELSGSVCLDVINQTWSPMFDMINIFEVFLPQLLRYPNASDPLNGEAAALLLREPNTYYAKVRDYI 143
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBCD4_DROME (Ubiquitin-conjugating enzyme E2-22 kDa OS=Drosophila melanogaster GN=UbcD4 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17 Identity = 48/132 (36.36%), Postives = 75/132 (56.82%), Query Frame = 3 Query: 9 ARKRLMRDFK---RLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYA-DGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSE 392 A R+ R+FK R ++ I ++S I GP DTP++GG F L ++ E YP PP VRF++R++HPNI + G+ICLDIL++ W+ + +L S+Q+LL P+ P ++ A F + Sbjct: 5 AVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYPFNPPKVRFITRIWHPNISSVTGAICLDILKDNWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVAYQFKD 136
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC1_MIMIV (Probable ubiquitin-conjugating enzyme E2 L460 OS=Acanthamoeba polyphaga mimivirus GN=UBC PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 3.275e-17 Identity = 40/115 (34.78%), Postives = 70/115 (60.87%), Query Frame = 3 Query: 84 DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ-WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425 D +I LW I GP+++ ++ F+L ++ + DYP P V+F++ + H N+ G ICL+IL+ W+ ++ +I+ SI LL PNP P NSE A ++ +K Y++++R+ Sbjct: 33 DENIFLWKVNIKGPENSLYENYNFELEIELSNDYPYSSPKVKFITPIQHMNVNDKGDICLNILKKDGWNASLNIISIIWSIIVLLDQPNPEDPFNSELASLYRNDKLSYDKKIRD 147 The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 256
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bpback to top |