CK939327
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15 Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 3 Query: 18 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422 RL +D L IS N +M + I PD+ + G F + Q + YP++ P V+ ++++HPNI +G++CL+IL+ W P+ ++ ++ + L +PN P N EAA + +N + + VR Sbjct: 35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTI-KPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2) HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15 Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 3 Query: 12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404 +KRL ++ LQ DPPAG ++ N+I W + G T ++G F+L +F+ YP + P V F HP++Y++G ICL IL WSP V ++ SI S+L C P NS + ++N ++ Sbjct: 5 QKRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVKTCNKNPKK 141
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15 Identity = 47/137 (34.31%), Postives = 69/137 (50.36%), Query Frame = 3 Query: 12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404 +KRL ++ LQ DPP G ++ NSI W + G T ++G F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI S+L C P NS R ++N ++ Sbjct: 5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15 Identity = 47/137 (34.31%), Postives = 69/137 (50.36%), Query Frame = 3 Query: 12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404 +KRL ++ LQ DPP G ++ NSI W + G T ++G F+L +F+ YP P V F HP++Y++G ICL IL WSP V ++ SI S+L C P NS R ++N ++ Sbjct: 5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14 Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 335 A KRL +++K + ++PP I P +++I+ W+ +I GP DTP+ GG + TL F DYP KPP +R + + F PN +CL D + W+P + V+ IL + S + Sbjct: 6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTILNGLLSFM 115
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2) HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14 Identity = 31/85 (36.47%), Postives = 56/85 (65.88%), Query Frame = 3 Query: 123 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 377 P++ + GG F+ ++ F + YP +PPTV+ ++ ++HPNI G+ICL++L+ WSP+ D+ ++ + L +PN + P N +AA Sbjct: 67 PEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14 Identity = 35/146 (23.97%), Postives = 75/146 (51.37%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 440 A +RL R+ L + + + D S+++W ++ P+ P++ G F++ + F YP PP + F ++++HPN+ G +CL I+ + W P +L ++ +++ +P P P S+ A F +++ + E +++ Sbjct: 3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKN 147
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14 Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 371 A RL ++ Q +PP G DN + W + G T + T++L ++F E YP + P V FVS HP+IY++G ICLDIL + WSP V ++ SI S+L P PA+++ Sbjct: 16 ACNRLQKELSEWQLNPPTGFRHKVTDN-LQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADND 137
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13 Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 335 A RL ++ Q +PP G DN + W + G T + T++L + F E YP + P V F+ HP+IY++G ICLDIL + WSP V++I SI S+L Sbjct: 16 ATNRLQKELVEWQMNPPTGFKHKVTDN-LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13 Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3 Query: 9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 335 A RL ++F Q +PP+G DN + W + G T + T++L ++F E YP + P V F HP+IY++G ICLD+L + WSP +++I SI S+L Sbjct: 16 ATNRLQKEFMEWQTNPPSGFKHRVSDN-LQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSML 124 The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 256
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Sequences
The
following sequences are available for this feature:
EST sequence >CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bpback to top |