CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.003e-15
Identity = 40/135 (29.63%), Postives = 70/135 (51.85%), Query Frame = 3
Query:   18 RLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            RL +D   L       IS     N +M +   I  PD+  +  G F  + Q +  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  ++  +  L  +PN   P N EAA +  +N + +   VR
Sbjct:   35 RLHKDISELNLPKSCKISFPNGKNDLMNFEVTI-KPDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_DANRE (Probable ubiquitin-conjugating enzyme E2 W OS=Danio rerio GN=ube2w PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 6.828e-15
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 3
Query:   12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404
            +KRL ++   LQ DPPAG  ++     N+I  W   + G   T ++G  F+L  +F+  YP + P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   +  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPAGMTLNERSVQNTITEWFIDMEGAQGTVYEGEKFQLLFKFSSRYPFESPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVKTCNKNPKK 141          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 47/137 (34.31%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404
            +KRL ++   LQ DPP G  ++     NSI  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   R  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 8.918e-15
Identity = 47/137 (34.31%), Postives = 69/137 (50.36%), Query Frame = 3
Query:   12 RKRLMRDFKRLQQDPPAG--ISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMF--HPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL--CDPNPNSPANSEAARMFSENKRE 404
            +KRL ++   LQ DPP G  ++     NSI  W   + G   T ++G  F+L  +F+  YP   P V F       HP++Y++G ICL IL   WSP   V ++  SI S+L  C      P NS   R  ++N ++
Sbjct:    5 QKRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLSSCKEKRRPPDNSFYVRTCNKNPKK 141          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC6_YEAST (Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces cerevisiae GN=UBC6 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.165e-14
Identity = 41/114 (35.96%), Postives = 65/114 (57.02%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFV--SRMFHPNIYADGSICL---DILQNQWSPIYDVAAILTSIQSLL 335
            A KRL +++K + ++PP  I   P +++I+ W+ +I GP DTP+ GG +  TL F  DYP KPP +R +  +  F PN      +CL   D   + W+P + V+ IL  + S +
Sbjct:    6 AHKRLTKEYKLMVENPPPYILARPNEDNILEWHYIITGPADTPYKGGQYHGTLTFPSDYPYKPPAIRMITPNGRFKPNT----RLCLSMSDYHPDTWNPGWSVSTILNGLLSFM 115          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.521e-14
Identity = 31/85 (36.47%), Postives = 56/85 (65.88%), Query Frame = 3
Query:  123 PDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAA 377
            P++  + GG F+ ++ F + YP +PPTV+ ++ ++HPNI   G+ICL++L+  WSP+ D+  ++  +  L  +PN + P N +AA
Sbjct:   67 PEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAA 151          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 35/146 (23.97%), Postives = 75/146 (51.37%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ-NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 440
            A +RL R+   L +   + +      D S+++W  ++  P+  P++ G F++ + F   YP  PP + F ++++HPN+   G +CL I+  + W P      +L ++ +++ +P P  P  S+ A  F    +++ +   E  +++
Sbjct:    3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKN 147          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC15_ARATH (Ubiquitin-conjugating enzyme 15 OS=Arabidopsis thaliana GN=UBC15 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 4.426e-14
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL-CDPNPNSPANSE 371
            A  RL ++    Q +PP G      DN +  W   + G   T +   T++L ++F E YP + P V FVS    HP+IY++G ICLDIL + WSP   V ++  SI S+L   P    PA+++
Sbjct:   16 ACNRLQKELSEWQLNPPTGFRHKVTDN-LQKWTIDVTGAPGTLYANETYQLQVEFPEHYPMEAPQVVFVSPAPSHPHIYSNGHICLDILYDSWSPAMTVNSVCISILSMLSSSPAKQRPADND 137          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC16_ARATH (Probable ubiquitin carrier protein E2 16 OS=Arabidopsis thaliana GN=UBC16 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.682e-13
Identity = 41/110 (37.27%), Postives = 59/110 (53.64%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 335
            A  RL ++    Q +PP G      DN +  W   + G   T +   T++L + F E YP + P V F+     HP+IY++G ICLDIL + WSP   V++I  SI S+L
Sbjct:   16 ATNRLQKELVEWQMNPPTGFKHKVTDN-LQRWIIEVIGAPGTLYANDTYQLQVDFPEHYPMESPQVIFLHPAPLHPHIYSNGHICLDILYDSWSPAMTVSSICISILSML 124          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC17_ARATH (Probable ubiquitin carrier protein E2 17 OS=Arabidopsis thaliana GN=UBC17 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.197e-13
Identity = 40/110 (36.36%), Postives = 61/110 (55.45%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRM-FHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLL 335
            A  RL ++F   Q +PP+G      DN +  W   + G   T +   T++L ++F E YP + P V F      HP+IY++G ICLD+L + WSP   +++I  SI S+L
Sbjct:   16 ATNRLQKEFMEWQTNPPSGFKHRVSDN-LQRWIIEVHGVPGTLYANETYQLQVEFPEHYPMEAPQVIFQHPAPLHPHIYSNGHICLDVLYDSWSPAMRLSSICLSILSML 124          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UB12L_ARATH4.003e-1529.63Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBE2W_DANRE6.828e-1533.58Probable ubiquitin-conjugating enzyme E2 W OS=Dani... [more]
UBE2W_MOUSE8.918e-1534.31Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN8.918e-1534.31Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBC6_YEAST1.165e-1435.96Ubiquitin-conjugating enzyme E2 6 OS=Saccharomyces... [more]
UBC12_ASHGO1.521e-1436.47NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBC84_DROME4.426e-1423.97Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBC15_ARATH4.426e-1436.59Ubiquitin-conjugating enzyme 15 OS=Arabidopsis tha... [more]
UBC16_ARATH1.682e-1337.27Probable ubiquitin carrier protein E2 16 OS=Arabid... [more]
UBC17_ARATH2.197e-1336.36Probable ubiquitin carrier protein E2 17 OS=Arabid... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
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