CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.200e-27
Identity = 53/130 (40.77%), Postives = 87/130 (66.92%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GIS +P ++++  +N +I GP  +P++GG FKL L   E+YP   P VRF+++++HPNI   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P +   A+ +  N+ E
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAE 137          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 2.673e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2C_DROME (Ubiquitin-conjugating enzyme E2 C OS=Drosophila melanogaster GN=vih PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 60/141 (42.55%), Postives = 86/141 (60.99%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQ 437
            KRL ++   L      GIS  P   +I  W   I GP +T + G T++L+L F   YP   P V+F++  FHPN+   G+ICLDIL+++WS +YDV  IL SIQSLL +PN  SP N++AA M+++ K EY + +    E+
Sbjct:   35 KRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPNSYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDKWSALYDVRTILLSIQSLLGEPNNESPLNAQAAMMWNDQK-EYKKYLDAFYEK 174          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_SCHPO (SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyces pombe GN=hus5 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 61/144 (42.36%), Postives = 83/144 (57.64%), Query Frame = 3
Query:   12 RKRLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            + RL  + K+ ++D P G    P  +S     +M W   I G   T W+GG +KLT+ F E+YP +PP  RF   +FHPN+Y  G++CL IL  +  W P   +  IL  IQ LL DPN  SPA +EA  MF ++K EY +RVR
Sbjct:    6 KTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC7_YEAST (Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharomyces cerevisiae GN=UBC7 PE=1 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 3.491e-27
Identity = 57/152 (37.50%), Postives = 92/152 (60.53%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQ-DNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A+KRL+++ ++L +D P GI   P+ +N+I +W+ +I GP DTP+  G F   L+F +DYP  PP + F   + HPNIY +G +C+ IL             + +WSP+  V  IL S+ S+L +PN  S AN +A  ++ +N+ E+ R+V+
Sbjct:    5 AQKRLLKELQQLIKDSPPGIVAGPKSENNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC13_YEAST (Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyces cerevisiae GN=UBC13 PE=1 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 4.559e-27
Identity = 52/137 (37.96%), Postives = 87/137 (63.50%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 425
            KR++++ ++L  DP  GI+  P D+++  +   I GP+ +P++ G F+L L   +DYP + P VRF+++++HPNI   G ICLD+L+  WSP   +  +L SIQ+LL  PNPN P  ++ A  + +N++    + RE
Sbjct:    6 KRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTNWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKARE 142          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_RAT (Ubiquitin-conjugating enzyme E2 N OS=Rattus norvegicus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.954e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKSNEAQ 135          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.954e-27
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 3
Query:   18 RLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            RL  + K  ++D P G    P  N+     + +WN  I G   T W+GG + L ++FTEDYP+KPP  RF    FHPN+Y  G++CL IL  +  W P   +  +L  IQ LL +PNP SPA      +F  NK EY+++V+
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVK 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 5.954e-27
Identity = 61/156 (39.10%), Postives = 91/156 (58.33%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 440
            K+ + D +R+  D   G S G   DN I  W  ++ GP DT ++GG FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA+M  EN  E+ ++V + V +S
Sbjct:    9 KKQLADMRRVPVD---GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_PONAB (Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii GN=UBE2N PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBC35_ARATH1.200e-2740.77Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_MACFA2.673e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]
UBE2C_DROME3.491e-2742.55Ubiquitin-conjugating enzyme E2 C OS=Drosophila me... [more]
UBC9_SCHPO3.491e-2742.36SUMO-conjugating enzyme ubc9 OS=Schizosaccharomyce... [more]
UBC7_YEAST3.491e-2737.50Ubiquitin-conjugating enzyme E2-18 kDa OS=Saccharo... [more]
UBC13_YEAST4.559e-2737.96Ubiquitin-conjugating enzyme E2 13 OS=Saccharomyce... [more]
UBE2N_RAT5.954e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Rattus norveg... [more]
UBC9_DICDI5.954e-2740.14Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC7_CAEEL5.954e-2739.10Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UBE2N_PONAB7.776e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Pongo abelii ... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
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