CK939327

Overview
NameCK939327
Unique NameCK939327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_MOUSE (Ubiquitin-conjugating enzyme E2 N OS=Mus musculus GN=Ube2n PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_HUMAN (Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens GN=UBE2N PE=1 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBE2N_BOVIN (Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN=UBE2N PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 52/130 (40.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:   15 KRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKRE 404
            +R++++ +RL  +P  GI   P +++   ++ VI GP D+P++GGTFKL L   E+YP   P VRF+++++HPN+   G ICLDIL+++WSP   +  +L SIQ+LL  PNP+ P  ++ A  +  N+ +
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQ 135          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 7.776e-27
Identity = 59/154 (38.31%), Postives = 89/154 (57.79%), Query Frame = 3
Query:   21 LMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 440
            L +  K L + P  G S G   + +I  W+  I GP DT ++GG F   + F ++YPN PPTVRF S M+HPN+Y+DG +C+ IL               +W+P++ V +I+ SI S+L  PN  SPAN EAA+ + + + E+ ++V   V +S
Sbjct:    9 LQKQLKDLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKS 162          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9A_DANRE (SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 1.326e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_XENTR (SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CK939327 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.732e-26
Identity = 58/145 (40.00%), Postives = 82/145 (56.55%), Query Frame = 3
Query:    9 ARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 422
            A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    5 ALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
The following BLAST results are available for this feature:
BLAST of CK939327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 256
Match NameE-valueIdentityDescription
UBE2N_MOUSE7.776e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Mus musculus ... [more]
UBE2N_HUMAN7.776e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Homo sapiens ... [more]
UBE2N_BOVIN7.776e-2740.00Ubiquitin-conjugating enzyme E2 N OS=Bos taurus GN... [more]
UBC7_ARATH7.776e-2738.31Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC9A_DANRE1.326e-2640.00SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=u... [more]
UBC9_XENTR1.732e-2640.00SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis... [more]
UBC9_XENLA1.732e-2640.00SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.732e-2640.00SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.732e-2640.00SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.732e-2640.00SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCGF1004752_A07 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939327 ID=CK939327; Name=CK939327; organism=Citrus sinensis; type=EST; length=523bp
CGACTCCTGCAAGGAAGAGATTGATGAGGGATTTTAAGAGGTTACAACAA
GATCCTCCGGCTGGCATTAGTGGTGCTCCTCAGGACAACAGTATAATGCT
TTGGAATGCTGTTATATTCGGGCCGGATGACACCCCATGGGATGGAGGTA
CGTTTAAATTGACACTTCAGTTCACAGAGGATTATCCAAATAAGCCACCA
ACAGTGCGCTTTGTTTCTCGGATGTTCCATCCAAATATTTATGCGGATGG
AAGCATTTGCTTGGACATTCTACAAAATCAGTGGAGTCCAATTTACGATG
TAGCAGCAATACTCACGTCAATTCAGTCATTGCTTTGTGACCCAAATCCA
AACTCTCCTGCAAATTCGGAGGCAGCACGGATGTTTAGCGAGAACAAGCG
TGAATACAATAGGAGAGTACGGGAAATTGTTGAGCAGAGTTGGACTGCTG
ACTAGTGGCAACTTGTTGGAATGTAGGGAACTTCAAAAATAGTCCAATGG
CTTGTTCTAAATAACATTTAAGA
back to top