EY666003

Overview
NameEY666003
Unique NameEY666003
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: CTU1_LODEL (Cytoplasmic tRNA 2-thiolation protein 1 OS=Lodderomyces elongisporus GN=NCS6 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 7.832e-53
Identity = 104/193 (53.89%), Postives = 132/193 (68.39%), Query Frame = 1
Query:  229 VAESKSKKAG-GRLCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGER--------IAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            V  S +KK     LC  C+ RKA +KRPK L ++C+ECF+ VFE E+H  IV N+LF   E         +AIGASGGKDSTVLA V+  LN R+NYGL L LL IDEGI GYRD SL+TVK N+ +Y +PL+I+SYKDLY WTMDE+V   G++++CT+CG  R QALD+ A  +    I T HNA + A+T
Sbjct:    2 VESSNTKKVKVSSLCELCHGRKAVMKRPKNLRKLCKECFFHVFETEVHNTIVENKLFANVENSEFPERRAVAIGASGGKDSTVLASVMKTLNERYNYGLKLVLLCIDEGIKGYRDHSLETVKMNQKEYDMPLEILSYKDLYDWTMDEVVSCAGIRSSCTYCGVLRRQALDKGAEKLGINHIVTGHNADDMAET 194          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: CTU1_BOVIN (Cytoplasmic tRNA 2-thiolation protein 1 OS=Bos taurus GN=CTU1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.484e-35
Identity = 77/176 (43.75%), Postives = 110/176 (62.50%), Query Frame = 1
Query:  268 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVKVIGLKNN----CTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            C++C++ +AAL+RP++ + +C  CF   FE E+   +V  +L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L  V+R   ++ LPL +V+Y DL+ GWTMD + +           CTFCG  R +AL+  A LV    + T HNA + A+T
Sbjct:    6 CASCHKARAALRRPRSGQALCGSCFCAAFEAEVLHTVVAGRLLPPGAVVAVGASGGKDSTVLAHVLRELAPR--LGISLHLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYADLFGGWTMDAVARSTAGSGRSRACCTFCGVLRRRALEEGARLVGATHVVTGHNADDMAET 179          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: CTU1_RAT (Cytoplasmic tRNA 2-thiolation protein 1 OS=Rattus norvegicus GN=Ctu1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.639e-35
Identity = 77/176 (43.75%), Postives = 112/176 (63.64%), Query Frame = 1
Query:  268 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVKVIG----LKNNCTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            C +C++ +AAL+RP++ + +C  CF   FE E+ + ++   L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L+ V+    ++ LPL IV+Y+DL+ GWTMD + +        ++ CTFCG  R +AL+  A LV    I T HNA + A+T
Sbjct:    6 CFSCHKARAALRRPRSGQALCGPCFCAAFEAEVLRTVLAGHLLPQGAVVAVGASGGKDSTVLAHVLRELAPR--LGITLHLVAVDEGIGGYRDAALEAVRSQAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGATHIVTGHNADDMAET 179          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: CTU1_MOUSE (Cytoplasmic tRNA 2-thiolation protein 1 OS=Mus musculus GN=Ctu1 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 5.639e-35
Identity = 77/176 (43.75%), Postives = 111/176 (63.07%), Query Frame = 1
Query:  268 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVKVIG----LKNNCTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            C +C++ +AAL+RP++ + +C  CF   FE E+   ++   L   G  +A+GASGGKDSTVLA VL EL  R   G+ L L+++DEGI GYRD +L+ V+    ++ LPL IV+Y+DL+ GWTMD + +        ++ CTFCG  R +AL+  A LV    I T HNA + A+T
Sbjct:    6 CFSCHKTRAALRRPRSGQALCGSCFCAAFEAEVLHTVLAGHLLPPGAVVAVGASGGKDSTVLAHVLRELAPR--LGITLHLVAVDEGIGGYRDAALEAVRSQAARWELPLTIVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARLVGATHIVTGHNADDMAET 179          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: CTU1_HUMAN (Cytoplasmic tRNA 2-thiolation protein 1 OS=Homo sapiens GN=CTU1 PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.369e-33
Identity = 75/176 (42.61%), Postives = 109/176 (61.93%), Query Frame = 1
Query:  268 CSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLY-GWTMDEIVKVIG----LKNNCTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            C++C+  +AAL+RP + + +C  CF   FE E+   ++  +L   G  +A+GASGGKDSTVLA VL  L  R   G+ L L+++DEGI GYRD +L  V+R   ++ LPL +V+Y+DL+ GWTMD + +        ++ CTFCG  R +AL+  A  V    I T HNA + A+T
Sbjct:    6 CASCHAARAALRRPLSGQALCGACFCAAFEAEVLHTVLAGRLLPPGAVVAVGASGGKDSTVLAHVLRALAPR--LGISLQLVAVDEGIGGYRDAALAAVRRQAARWELPLTVVAYEDLFGGWTMDAVARSTAGSGRSRSCCTFCGVLRRRALEEGARRVGATHIVTGHNADDMAET 179          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: Y1157_METJA (CTU1/ATPBD3 family protein MJ1157 OS=Methanocaldococcus jannaschii GN=MJ1157 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.692e-20
Identity = 62/177 (35.03%), Postives = 95/177 (53.67%), Query Frame = 1
Query:  265 LCSTCNQRKAALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVK-----VIGLKNNCTFCGGFRPQALDRSASLVKGKQIATEHNAKEFAQT 780
            LCS  N+  A   +  +   +C+ECF +  E    +V+ G  + +   +I IG SGGKDS V+A++L EL + H     L    +DEGI G+R+ + + VK    +Y L LKI+ ++D  G+T+DEIVK      + +   C+FCG  R   L++ A       +A  HN  +F QT
Sbjct:   39 LCSCGNE--AFYYQKYSNRHLCKECFKKDIERRAKKVL-GKDIIRNNVKIGIGISGGKDSLVMAYILKELFK-HIPNAKLICFFVDEGIKGFRNIAEKYVKEFCKEYNLDLKIIKFEDEIGYTLDEIVKNDYLSKLNIGKPCSFCGVVRRYLLNKHALKEGCDYLAIGHNLDDFCQT 211          
BLAST of EY666003 vs. ExPASy Swiss-Prot
Match: Y1478_METJA (CTU1/ATPBD3 family protein MJ1478 OS=Methanocaldococcus jannaschii GN=MJ1478 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.645e-13
Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 1
Query:  268 CSTCNQRK-AALKRPKTLEQICRECFYEVFEEEIHQVIVGNQLFKAGERIAIGASGGKDSTVLAFVLSELNRRHNYGLDLFLLSIDEGISGYRDDSLQTVKRNEIQYGLPLKIVSYKDLYGWTMDEIVKVIGLKNNCTFCGGFRPQALDRSASLVKGKQIATEHN 759
            C  C+++    LK PK    +C+E F E FE ++ + I   ++    E+I +  SGGKD    A+VL +L     Y ++LF +++  GI G+ ++SL+ VK    +  +PL +V+ KD+ G TM++I         C+ CG  +   +++         I T HN
Sbjct:    7 CKFCDKKSYIKLKSPKMY--LCKEHFVEYFENKVKKSIDKYKMLSKDEKILVAVSGGKDGHAAAWVLKKL----GYNIELFHINL--GIEGFSEESLKAVKELAEKLEVPLHVVNLKDITGKTMEDI-----RGKKCSICGTTKRYLMNKFGYENGFDVIVTGHN 158          
The following BLAST results are available for this feature:
BLAST of EY666003 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
CTU1_LODEL7.832e-5353.89Cytoplasmic tRNA 2-thiolation protein 1 OS=Loddero... [more]
CTU1_BOVIN1.484e-3543.75Cytoplasmic tRNA 2-thiolation protein 1 OS=Bos tau... [more]
CTU1_RAT5.639e-3543.75Cytoplasmic tRNA 2-thiolation protein 1 OS=Rattus ... [more]
CTU1_MOUSE5.639e-3543.75Cytoplasmic tRNA 2-thiolation protein 1 OS=Mus mus... [more]
CTU1_HUMAN2.369e-3342.61Cytoplasmic tRNA 2-thiolation protein 1 OS=Homo sa... [more]
Y1157_METJA6.692e-2035.03CTU1/ATPBD3 family protein MJ1157 OS=Methanocaldoc... [more]
Y1478_METJA4.645e-1330.30CTU1/ATPBD3 family protein MJ1478 OS=Methanocaldoc... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-F03-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666003 ID=EY666003; Name=EY666003; organism=Citrus sinensis; type=EST; length=894bp
CCACGCGTCCGCCCACGCGTCCGTGAGAAGGTCCAGAGACTTTGGAGGGG
TGAGGGTGCCGGTCGGACCGCTGCTTTCATAACAGTTCCATTCCGAGAAG
CTGTTGCCGCACTGCAAAAGCAAACTCAAATCTTCAATTTTTCCCTCATA
ACCCAAACTTGATCTCTTGTAAGTCTGTTAGCTTGTCTCTTCATAGTTTA
CTTAGTGGGCCATTAACCGTCAATGGAGGTCGCCGAGTCGAAGTCCAAGA
AGGCCGGTGGCCGCCTTTGTTCCACCTGTAACCAGAGAAAGGCTGCCCTC
AAACGACCTAAAACCCTAGAACAGATATGTAGGGAGTGTTTCTATGAGGT
ATTTGAGGAGGAGATCCACCAAGTCATTGTGGGCAATCAGCTATTCAAGG
CTGGTGAGCGTATTGCCATCGGCGCCTCTGGTGGAAAAGATTCCACTGTC
CTTGCTTTTGTGTTGTCAGAGCTGAACCGGCGTCACAACTATGGCCTTGA
TCTTTTCCTCCTATCAATTGATGAAGGCATTTCAGGATACAGGGATGATT
CACTTCAAACTGTCAAAAGAAATGAAATTCAGTATGGTCTGCCACTGAAG
ATTGTTTCATACAAGGATTTATATGGATGGACAATGGATGAGATAGTGAA
GGTGATCGGTTTAAAGAATAATTGCACCTTTTGTGGGGGTTTTCGCCCGC
AGGCCCTTGATCGAAGTGCTTCCTTGGTGAAAGGGAAACAGATTGCAACG
GAACATAATGCAAAGGAATTTGCGCAAACTGGCTAATGAAAATATGGCGA
GTGAAATTGCTAAATGAGTAAATGACATTGAAAAAAACTGGGAGAAAAGA
ACCGATCCAAGAAGCGACCTGTTAAGGCCCTTGAACGGAGAGGT
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