CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ERWCT (Fatty acid oxidation complex subunit alpha OS=Erwinia carotovora subsp. atroseptica GN=fadJ PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.672e-15
Identity = 57/190 (30.00%), Postives = 86/190 (45.26%), Query Frame = 2
Query:    2 ALPNNEKTHWGKPSQPLLNLLISENIVXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICG--EAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            A P  EKT          +L I  + + + +      + N L ++    +   FE   + ++   ++  S+ P  F AGAD+    + S +E         + TF  + AL  P +A I              CD R+C   E  +LGLPE  L ++PG+GGTQRLPRL+G   A D+I TGR +    A
Sbjct:   11 ASPTTEKTS-------AFSLTIRPDNIGVISIDVPGERVNTLKSEFAEQILSVFELARQHATLRGLIFISAKPDSFIAGADITMLNKCSSAEQAENLAKQGQETFDQIAALPFPVVAAIHGACLGGGLELALACDYRVCSLDEKTVLGLPEVQLGLLPGSGGTQRLPRLIGLDSALDLILTGRHLRAGQA 193          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERE8 (Fatty acid oxidation complex subunit alpha OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 51/151 (33.77%), Postives = 75/151 (49.67%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+    F  GAD+ E   +    P ++H ++      F+ LE L +PTIA I+              D R+    A +GLPET L I+PG GG+ RLPRL+G   A +II  G+ +  KDA
Sbjct:   29 NKLDTQTVANLGEALVVLEKQSELKGLLLRSA-KAAFIVGADITEFLSLFNEPPEKLHQWLVFANDIFNRLEDLPVPTIAAINGYALGGGCECILATDFRVASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIAAGKDIIAKDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_BACSU (Probable enoyl-CoA hydratase OS=Bacillus subtilis GN=fadB PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 4.796e-15
Identity = 56/170 (32.94%), Postives = 78/170 (45.88%), Query Frame = 2
Query:   74 NIVXINTSQF------HEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N + +   QF      H    NAL + +L  L    +    D+    ++I     + FSAGAD+KE   +  +E         +     +E+   P IA I              C +RI  E A LGLPE  L IIPG  GTQRLPR VG + A ++I +G  +SGK+A
Sbjct:    2 NAISLAVDQFVAVLTIHNPPANALSSRILEELSSCLDQCETDAGVRSIIIHGE-GRFFSAGADIKEFTSLKGNEDSSLLAERGQQLMERIESFPKPIIAAIHGAALGGGLELAMACHIRIAAEDAKLGLPELNLGIIPGFAGTQRLPRYVGTAKALELIGSGEPISGKEA 170          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPY (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPS (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPP (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis (strain Pestoides F) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPN (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPG (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis bv. Antiqua (strain Angola) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPE (Fatty acid oxidation complex subunit alpha OS=Yersinia pestis GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_YERPB (Fatty acid oxidation complex subunit alpha OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=fadB PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.264e-15
Identity = 51/151 (33.77%), Postives = 77/151 (50.99%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQM---SPSEIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L T  +  L  A   + + S    +++RS+   +   GAD+ E   +    P ++H ++    + F+ LE L +PTI+ I+              D RI    A +GLPET L I+PG GG+ RLPRL+G   A +II TG+ V+  DA
Sbjct:   29 NKLDTKTVANLGEALNVLEKQSELKGLLLRSAKTALI-VGADITEFLSLFNAPPEKLHQWLVFANTIFNRLEDLPVPTISAINGYALGGGCECILATDFRIASPEARIGLPETKLGIMPGFGGSVRLPRLLGADSALEIIATGKDVTANDA 178          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADJ_ERWCT3.672e-1530.00Fatty acid oxidation complex subunit alpha OS=Erwi... [more]
FADB_YERE84.796e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_BACSU4.796e-1532.94Probable enoyl-CoA hydratase OS=Bacillus subtilis ... [more]
FADB_YERPY6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPS6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPP6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPN6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPG6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPE6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]
FADB_YERPB6.264e-1533.77Fatty acid oxidation complex subunit alpha OS=Yers... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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