CK939288

Overview
NameCK939288
Unique NameCK939288
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length563
Libraries
Library NameType
Developing fruit flavedo at 165 DAFBcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADB_SHEB9 (Fatty acid oxidation complex subunit alpha OS=Shewanella baltica (strain OS195) GN=fadB PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.706e-12
Identity = 49/151 (32.45%), Postives = 72/151 (47.68%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE---IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N    + L  L  A ++I +DS+   +++ SS    F  GAD+ E   +   +   +  +V    + F+ LE L  PT + I               D R+    A +GLPET L IIPG GGT RLPR++G   A + I TG+    +DA
Sbjct:   29 NKFDRETLASLDAALDSIKQDSNIKALVLTSS-KDTFIVGADITEFLGLFAQDDAVLLSWVEQANAVFNKLEDLPFPTASAIKGFALGGGCETILATDFRVADTTAKIGLPETKLGIIPGFGGTVRLPRVIGADNALEWITTGKDQRAEDA 178          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHISS (Fatty acid oxidation complex subunit alpha OS=Shigella sonnei (strain Ss046) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHIFL (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHIF8 (Fatty acid oxidation complex subunit alpha OS=Shigella flexneri serotype 5b (strain 8401) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEINALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_SHIB3 (Fatty acid oxidation complex subunit alpha OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_PHOLL (Fatty acid oxidation complex subunit alpha OS=Photorhabdus luminescens subsp. laumondii GN=fadJ PE=3 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 46/151 (30.46%), Postives = 69/151 (45.70%), Query Frame = 2
Query:  119 NALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPSE-IHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            N L  + +    + F+   + S    +++ S  P  F AGAD+         E         +  FS +    +P +A I              C  R+C +     LGLPE  L ++PG+GGTQRLPRL+G S A DI+ TG+++  K A
Sbjct:   44 NTLKAEFVDQFLNVFKQAQQSSGLKGLILISGKPDTFIAGADISMIAGCKTKEDARDLAEKGQKLFSQIANYPLPVVAAIHGACLGGGLELALACHWRVCSQDDKTRLGLPEVQLGLLPGSGGTQRLPRLIGVSSALDIMLTGKQLRAKQA 194          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOUT (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain UTI89 / UPEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 IRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOSM (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 45/134 (33.58%), Postives = 67/134 (50.00%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGEAA--LLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + E+     V+  S+ P  F AGAD+        + E        +   + + AL +P IA I              C  R+C + A  +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 LRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPVPVIAAIHGACLGGGLELALACHGRVCTDDAKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOLC (Fatty acid oxidation complex subunit alpha OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 49/164 (29.88%), Postives = 76/164 (46.34%), Query Frame = 2
Query:   80 VXINTSQFHEYQKNALGTDMLRGL*HAFETISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            + I T    + + N L  +    +    + + E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   16 IAIITIDVPDEKMNTLKAEFASQVRAIIKQLRENKELRGVVFISAKPDNFIAGADINMIGNCKTAQEAEALARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
BLAST of CK939288 vs. ExPASy Swiss-Prot
Match: FADJ_ECOK1 (Fatty acid oxidation complex subunit alpha OS=Escherichia coli O1:K1 / APEC GN=fadJ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.228e-12
Identity = 46/134 (34.33%), Postives = 66/134 (49.25%), Query Frame = 2
Query:  170 ISEDSSANVVMIRSSVPKVFSAGADLKERRQMSPS-EIHFYVNTLRSTFSFLEALRIPTIAVIDXXXXXXXXXXXXXCDLRICGE--AALLGLPETGLAIIPGAGGTQRLPRLVGKSVAKDIIFTGRKVSGKDA 562
            I E+     V+  S+ P  F AGAD+        + E        +   + + AL IP IA I              C  R+C +    +LGLPE  L ++PG+GGTQRLPRL+G S A ++I TG+++  K A
Sbjct:   46 IRENKELRGVVFVSAKPDNFIAGADINMIGNCKTAQEAEVLARQGQQLMAEIHALPIPVIAAIHGACLGGGLELALACHGRVCTDDPKTVLGLPEVQLGLLPGSGGTQRLPRLIGVSTALEMILTGKQLRAKQA 179          
The following BLAST results are available for this feature:
BLAST of CK939288 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 205
Match NameE-valueIdentityDescription
FADB_SHEB91.706e-1232.45Fatty acid oxidation complex subunit alpha OS=Shew... [more]
FADJ_SHISS2.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIFL2.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIF82.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_SHIB32.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Shig... [more]
FADJ_PHOLL2.228e-1230.46Fatty acid oxidation complex subunit alpha OS=Phot... [more]
FADJ_ECOUT2.228e-1234.33Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOSM2.228e-1233.58Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOLC2.228e-1229.88Fatty acid oxidation complex subunit alpha OS=Esch... [more]
FADJ_ECOK12.228e-1234.33Fatty acid oxidation complex subunit alpha OS=Esch... [more]

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Properties
Property NameValue
Genbank descriptionCGF1004752_F11 Developing fruit flavedo at 165 DAFB Citrus sinensis cDNA clone F1650001_IVF_F11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CK939288 ID=CK939288; Name=CK939288; organism=Citrus sinensis; type=EST; length=563bp
TGCCCTCCCAAATAACGAAAAAACCCATTGGGGCAAACCTTCCCAGCCAC
TTTTAAATTTATTAATCTCTGAAAATATTGTNNNNATCAACACTTCTCAG
TTTCATGAGTACCAAAAAAATGCGCTTGGAACGGATATGTTGAGAGGCTT
ATAGCATGCATTTGAAACTATCAGTGAGGATTCCTCTGCTAATGTTGTCA
TGATACGTAGCTCGGTTCCTAAAGTGTTCAGTGCTGGAGCTGATTTGAAG
GAACGCAGGCAAATGAGTCCATCTGAGATTCATTTTTATGTCAACACATT
GCGATCTACATTCTCCTTCTTAGAGGCACTTCGTATTCCAACCATTGCTG
TTATTGATGGAGCAGCATTGGGTGGTGGACTTGAAATGGCACTAGCATGT
GATCTTCGCATCTGTGGAGAAGCAGCACTATTGGGCTTGCCTGAAACAGG
ACTTGCTATAATTCCTGGGGCGGGTGGGACACAGCGGCTTCCAAGATTAG
TTGGAAAATCAGTAGCAAAAGATATTATATTTACTGGCCGCAAAGTTAGT
GGCAAAGATGCAA
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