CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A4_ARATH (Probable histone H2A.4 OS=Arabidopsis thaliana GN=At5g02560 PE=1 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.916e-39
Identity = 82/105 (78.10%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRSVK+GLQFPVGRIGRYLKKGRYS+RVGTGAP                  GNAARDNKKNRIIPRHVLLAVRNDEELG LL GVTIAHGGVLPNINP+LLPKKS
Sbjct:   26 SRSVKSGLQFPVGRIGRYLKKGRYSKRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIIPRHVLLAVRNDEELGTLLKGVTIAHGGVLPNINPILLPKKS 130          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_PETCR (Histone H2A OS=Petroselinum crispum PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.318e-38
Identity = 81/105 (77.14%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVGTGAP                  GNAARDNKK RIIPRH+LLAVRNDEELGKLLAGVT AHGGVLPNINPVLLPKK+
Sbjct:   24 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHLLLAVRNDEELGKLLAGVTFAHGGVLPNINPVLLPKKT 128          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_MAIZE (Histone H2A OS=Zea mays PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.721e-38
Identity = 81/105 (77.14%), Postives = 84/105 (80.00%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRSVKAGLQFPVGRIGRYLKKGRY+Q VGTGAP                  GNAARDNKK RIIPRHVLLA+RNDEELGKLL GVTIAHGGVLPNINPVLLPKK+
Sbjct:   30 SRSVKAGLQFPVGRIGRYLKKGRYAQXVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIIPRHVLLAIRNDEELGKLLGGVTIAHGGVLPNINPVLLPKKT 134          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_SOLLC (Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.541e-38
Identity = 80/105 (76.19%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAARDNKK+RIIPRHVLLAVRNDEELGKLLAGVTIA GGVLPNINPVLLPKKS
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPIYLAAVLEYLAAEVLELAGNAARDNKKSRIIPRHVLLAVRNDEELGKLLAGVTIASGGVLPNINPVLLPKKS 127          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A3_WHEAT (Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 3.246e-37
Identity = 75/105 (71.43%), Postives = 87/105 (82.86%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK+RI+PRH+LLAVRND+ELG+LLAGVTIAHGGV+PNINPVLLPKK+
Sbjct:   23 TRSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKSRIVPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINPVLLPKKA 127          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_PEA (Histone H2A.1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.537e-37
Identity = 77/104 (74.04%), Postives = 85/104 (81.73%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            +RSV+AGLQFPVGR+GR+LKKGRY+QRVGTGAP                  GNAARDNKKNRI PRH+LLAVRNDEELGKLLAGVTIA+GGVLPNINPVLLPK+
Sbjct:   25 TRSVRAGLQFPVGRVGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDEELGKLLAGVTIAYGGVLPNINPVLLPKR 128          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A5_WHEAT (Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 77/105 (73.33%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_WHEAT (Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 9.445e-37
Identity = 77/105 (73.33%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RSVKAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKKS
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKS 118          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_PEA (Histone H2A.2 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.104e-36
Identity = 77/105 (73.33%), Postives = 85/105 (80.95%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RSV+AGLQFPVGRIGR+LKKGRY+QRVGTGAP                  GNAARDNKKNRI PRH+LLAVRND ELGKLLAGVTIA+GGVLPNINPVLLPK++
Sbjct:   25 TRSVRAGLQFPVGRIGRFLKKGRYAQRVGTGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRISPRHLLLAVRNDVELGKLLAGVTIAYGGVLPNINPVLLPKRT 129          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_WHEAT (Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.748e-36
Identity = 72/105 (68.57%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            ++S+KAGLQFPVGRIGRYLKKGRY+QRVG+GAP                  GNAA+DNKK RI+PRH+LLA+RND+ELG+LL+GVTIAHGGV+PNINPVLLPKK+
Sbjct:   23 TKSIKAGLQFPVGRIGRYLKKGRYAQRVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHLLLAIRNDQELGRLLSGVTIAHGGVIPNINPVLLPKKA 127          
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A4_ARATH5.916e-3978.10Probable histone H2A.4 OS=Arabidopsis thaliana GN=... [more]
H2A_PETCR1.318e-3877.14Histone H2A OS=Petroselinum crispum PE=2 SV=1[more]
H2A_MAIZE1.721e-3877.14Histone H2A OS=Zea mays PE=2 SV=1[more]
H2A1_SOLLC6.541e-3876.19Histone H2A.1 OS=Solanum lycopersicum PE=2 SV=1[more]
H2A3_WHEAT3.246e-3771.43Histone H2A.2.2 OS=Triticum aestivum PE=1 SV=1[more]
H2A1_PEA5.537e-3774.04Histone H2A.1 OS=Pisum sativum PE=2 SV=1[more]
H2A5_WHEAT9.445e-3773.33Protein H2A.5 OS=Triticum aestivum GN=H2A-2 PE=2 S... [more]
H2A1_WHEAT9.445e-3773.33Histone H2A.1 OS=Triticum aestivum GN=H2A-9 PE=1 S... [more]
H2A2_PEA2.104e-3673.33Histone H2A.2 OS=Pisum sativum PE=2 SV=1[more]
H2A2_WHEAT2.748e-3668.57Histone H2A.2.1 OS=Triticum aestivum PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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