CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ASPNG (Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGL FPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKK+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ASPNC (Histone H2A OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=httA PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGL FPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKK+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ASPFU (Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGL FPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKK+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ASPCL (Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 66/105 (62.86%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGL FPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLPKK+
Sbjct:   18 SRSSKAGLAFPVGRVHRLLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQNLLPKKT 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_PICGU (Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 66/104 (63.46%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGL FPVGRI R L+KG Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLP K
Sbjct:   17 SRSAKAGLTFPVGRIHRLLRKGNYAQRVGSGAPVYLTSVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPSK 120          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1F_RAT (Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=3)

HSP 1 Score: 125.946 bits (315), Expect = 2.109e-28
Identity = 65/105 (61.90%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS +AGLQFPVGR+ R L+KG YS+RVG GAP                   NAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 TRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAANAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_CANGA (Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS KAGL FPVGR+ R L++G Y+QR+G+GAP                  GNAARDNKK+RIIPRH+ LA+RND+EL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_CANGA (Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=3)

HSP 1 Score: 125.561 bits (314), Expect = 2.754e-28
Identity = 63/105 (60.00%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS KAGL FPVGR+ R L++G Y+QR+G+GAP                  GNAARDNKK+RIIPRH+ LA+RND+EL KLL  VTIA GGVLPNI+  LLPKKS
Sbjct:   18 TRSAKAGLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDDELNKLLGNVTIAQGGVLPNIHQNLLPKKS 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A4_RAT (Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 63/105 (60.00%), Postives = 73/105 (69.52%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R L++G Y++R+G G P                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSFRAGLQFPVGRVHRLLRQGNYAERIGAGTPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_PICST (Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.597e-28
Identity = 65/104 (62.50%), Postives = 73/104 (70.19%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGL FPVGR+ R L+KG Y+QRVG+GAP                  GNAARDNKK+RIIPRH+ LA+RNDEEL KLL  VTIA GGVLPNI+  LLP K
Sbjct:   17 SRSAKAGLTFPVGRVHRLLRKGNYAQRVGSGAPVYLTSVLEYLAAEILELAGNAARDNKKSRIIPRHLQLAIRNDEELNKLLGHVTIAQGGVLPNIHQSLLPAK 120          
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_ASPNG2.109e-2862.86Histone H2A OS=Aspergillus niger GN=httA PE=2 SV=1[more]
H2A_ASPNC2.109e-2862.86Histone H2A OS=Aspergillus niger (strain CBS 513.8... [more]
H2A_ASPFU2.109e-2862.86Histone H2A OS=Aspergillus fumigatus GN=hta1 PE=3 ... [more]
H2A_ASPCL2.109e-2862.86Histone H2A OS=Aspergillus clavatus GN=hta1 PE=3 S... [more]
H2A1_PICGU2.109e-2863.46Histone H2A.1 OS=Pichia guilliermondii GN=HTA1 PE=... [more]
H2A1F_RAT2.109e-2861.90Histone H2A type 1-F OS=Rattus norvegicus PE=3 SV=... [more]
H2A2_CANGA2.754e-2860.00Histone H2A.2 OS=Candida glabrata GN=HTA2 PE=3 SV=... [more]
H2A1_CANGA2.754e-2860.00Histone H2A.1 OS=Candida glabrata GN=HTA1 PE=3 SV=... [more]
H2A4_RAT3.597e-2860.00Histone H2A type 4 OS=Rattus norvegicus PE=2 SV=2[more]
H2A2_PICST3.597e-2862.50Histone H2A.2 OS=Pichia stipitis GN=HTA2 PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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