CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_YARLI (Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.159e-16
Identity = 52/104 (50.00%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGRI RY+KK   ++ RVG  A                   GNAARD K  RI PRH+ LA+R DEEL  L+   TIA+GGV+P+IN  LL K
Sbjct:   31 SHSSRAGLQFPVGRIKRYMKKSVQNKVRVGAKAAIYIAAVLEYLTAEVLELAGNAARDLKVKRITPRHLQLAIRGDEELDTLIQ-ATIAYGGVMPHINKALLLK 133          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_PICST (Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 51/104 (49.04%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGRI RYLK+   ++ RVG+ +                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAYGGVLPHINKALLLK 125          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_ASHGO (Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 52/104 (50.00%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGRI RYLKK    + RVG+ A                   GNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SHSARAGLQFPVGRIKRYLKKNAAGKTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV_TETTH (Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 4.125e-16
Identity = 55/107 (51.40%), Postives = 64/107 (59.81%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYS--QRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGLQFPVGRI R+LK GR S   RVG  A                   GNA++D K  RI PRH+LLA+R DEEL  +L   TIA GGV+P+I+  LL K S
Sbjct:   29 SRSYKAGLQFPVGRIHRFLK-GRVSAKNRVGATAAVYAAAILEYLTAEVLELAGNASKDFKVRRITPRHLLLAIRGDEEL-DILIKATIAGGGVIPHIHKALLGKHS 133          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_DEBHA (Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 83.9593 bits (206), Expect = 9.190e-16
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGRI RYLK+   ++ RVG+ +                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP+IN  LL K
Sbjct:   23 SHSARAGLQFPVGRIKRYLKRTAQNKIRVGSKSAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDNLIK-ATIAFGGVLPHINKALLLK 125          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_KLULA (Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 1.200e-15
Identity = 50/104 (48.08%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGR+ RYLK+    + RVG+ A                   GNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SHSARAGLQFPVGRVKRYLKRNAAGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_YEAST (Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 PE=1 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.047e-15
Identity = 51/104 (49.04%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFPVGRI RYLK+    + RVG+ A                   GNAA+D K  RI PRH+ LA+R D+EL  L+   TIA GGVLP+IN  LL K
Sbjct:   24 SSSARAGLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR-ATIASGGVLPHINKALLLK 126          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_GIBZE (Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.561e-15
Identity = 49/104 (47.12%), Postives = 60/104 (57.69%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKG-RYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S +AGLQFP GR+ R+LK+  +   RVG  A                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA+GGVLP+IN  LL K
Sbjct:   30 SHSARAGLQFPCGRVKRFLKQNTQQKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAYGGVLPHINRALLLK 132          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_COCIM (Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 5.957e-15
Identity = 51/104 (49.04%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S KAGLQFP GRI R+LK    ++ RVG  A                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRIKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPRINRALLLK 127          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_NEOFI (Histone H2A.Z OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=htz1 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.780e-15
Identity = 50/104 (48.08%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            S S KAGLQFP GR+ R+LK    ++ RVG  A                   GNAA+D K  RI PRH+ LA+R DEEL  L+   TIA GGVLP IN  LL K
Sbjct:   25 SHSAKAGLQFPCGRVKRFLKNNTQNKMRVGAKAAVYVTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDEELDTLIR-ATIAFGGVLPRINRALLLK 127          
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AZ_YARLI3.159e-1650.00Histone H2A.Z OS=Yarrowia lipolytica GN=HTZ1 PE=3 ... [more]
H2AZ_PICST4.125e-1649.04Histone H2A.Z OS=Pichia stipitis GN=HTZ1 PE=3 SV=2[more]
H2AZ_ASHGO4.125e-1650.00Histone H2A.Z OS=Ashbya gossypii GN=HTZ1 PE=3 SV=3[more]
H2AV_TETTH4.125e-1651.40Histone H2A.Z OS=Tetrahymena thermophila GN=HTA3 P... [more]
H2AZ_DEBHA9.190e-1649.04Histone H2A.Z OS=Debaryomyces hansenii GN=HTZ1 PE=... [more]
H2AZ_KLULA1.200e-1548.08Histone H2A.Z OS=Kluyveromyces lactis GN=HTZ1 PE=3... [more]
H2AZ_YEAST2.047e-1549.04Histone H2A.Z OS=Saccharomyces cerevisiae GN=HTZ1 ... [more]
H2AZ_GIBZE4.561e-1547.12Histone H2A.Z OS=Gibberella zeae GN=HTZ1 PE=3 SV=1[more]
H2AZ_COCIM5.957e-1549.04Histone H2A.Z OS=Coccidioides immitis GN=HTZ1 PE=3... [more]
H2AZ_NEOFI7.780e-1548.08Histone H2A.Z OS=Neosartorya fischeri (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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