CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A6_WHEAT (Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 SV=3)

HSP 1 Score: 150.214 bits (378), Expect = 1.044e-35
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RSVKAGLQFPVGRIGRYLKKGRY+Q VG+GAP                  GNAA+DNKK RIIPRH+LLAVRND+ELG+LLAGVTIAHGGV+PNIN VLLPKK+
Sbjct:   14 TRSVKAGLQFPVGRIGRYLKKGRYAQAVGSGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIIPRHLLLAVRNDQELGRLLAGVTIAHGGVIPNINSVLLPKKA 118
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A7_ARATH (Probable histone H2A.7 OS=Arabidopsis thaliana GN=At5g59870 PE=1 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 3.038e-35
Identity = 75/105 (71.43%), Postives = 84/105 (80.00%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            S+S+KAGLQFPVGRI R+LKKGRY+QR+G GAP                  GNAARDNKK+RIIPRH+LLA+RNDEELGKLL+GVTIAHGGVLPNIN VLLPKKS
Sbjct:   26 SKSMKAGLQFPVGRITRFLKKGRYAQRLGGGAPVYMAAVLEYLAAEVLELAGNAARDNKKSRIIPRHLLLAIRNDEELGKLLSGVTIAHGGVLPNINSVLLPKKS 130
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A5_ARATH (Probable histone H2A.5 OS=Arabidopsis thaliana GN=At5g27670 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.730e-34
Identity = 74/105 (70.48%), Postives = 80/105 (76.19%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            S+SVKAGLQFPVGRI RYLKKGRY+ R G+GAP                  GNAARDNKKNRI PRH+ LA+RNDEELG+LL GVTIA GGVLPNINPVLLPKKS
Sbjct:   27 SKSVKAGLQFPVGRIARYLKKGRYALRYGSGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRINPRHLCLAIRNDEELGRLLHGVTIASGGVLPNINPVLLPKKS 131
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A3_VOLCA (Histone H2A-III OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.177e-33
Identity = 71/105 (67.62%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A4_VOLCA (Histone H2A-IV OS=Volvox carteri PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 3.714e-33
Identity = 71/105 (67.62%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKKS
Sbjct:   16 SRSSKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGDVTIASGGVLPNIHAVLLPKKS 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_CHLRE (Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.335e-33
Identity = 70/105 (66.67%), Postives = 79/105 (75.24%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGLQFPVGRI RYLKKG+Y++R+G GAP                  GNAARDNKKNRI+PRH+ LA+RNDEELGKLL  VTIA GGVLPNI+ VLLPKK+
Sbjct:   16 SRSAKAGLQFPVGRIARYLKKGKYAERIGAGAPVYLAAVLEYLTAEVLELAGNAARDNKKNRIVPRHIQLAIRNDEELGKLLGEVTIASGGVLPNIHAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_TETTH (Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 PE=1 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 1.081e-32
Identity = 69/105 (65.71%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R+LK GRYS+RVGTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP KS
Sbjct:   21 SRSARAGLQFPVGRISRFLKHGRYSERVGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_TETPY (Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE=1 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.411e-32
Identity = 68/105 (64.76%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP KS
Sbjct:   21 SRSARAGLQFPVGRISRFLKHGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKS 125
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_TETTH (Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_TETPY (Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE=1 SV=2)

HSP 1 Score: 139.043 bits (349), Expect = 2.407e-32
Identity = 67/105 (63.81%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R+LK GRYS+R+GTGAP                  GNAA+DNKK RI+PRH+LLA+RNDEEL KL+A  TIA GGVLPNINP+LLP K+
Sbjct:   21 SRSARAGLQFPVGRISRFLKNGRYSERIGTGAPVYLAAVLEYLAAEVLELAGNAAKDNKKTRIVPRHILLAIRNDEELNKLMANTTIADGGVLPNINPMLLPSKT 125
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A6_WHEAT1.044e-3571.43Protein H2A.6 OS=Triticum aestivum GN=H2A-3 PE=2 S... [more]
H2A7_ARATH3.038e-3571.43Probable histone H2A.7 OS=Arabidopsis thaliana GN=... [more]
H2A5_ARATH5.730e-3470.48Probable histone H2A.5 OS=Arabidopsis thaliana GN=... [more]
H2A3_VOLCA2.177e-3367.62Histone H2A-III OS=Volvox carteri PE=3 SV=1[more]
H2A4_VOLCA3.714e-3367.62Histone H2A-IV OS=Volvox carteri PE=3 SV=1[more]
H2A_CHLRE6.335e-3366.67Histone H2A OS=Chlamydomonas reinhardtii GN=H2A-II... [more]
H2AX_TETTH1.081e-3265.71Histone H2A.X OS=Tetrahymena thermophila GN=HTA1 P... [more]
H2AX_TETPY1.411e-3264.76Histone H2A.X OS=Tetrahymena pyriformis GN=HTA1 PE... [more]
H2A1_TETTH2.407e-3263.81Histone H2A.1 OS=Tetrahymena thermophila GN=HTA2 P... [more]
H2A1_TETPY2.407e-3263.81Histone H2A.1 OS=Tetrahymena pyriformis GN=HTA2 PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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