CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            +RS +AGLQFPVGRI R LK    S  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+   TIA GGV+P+I+  L+ KK
Sbjct:   19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS +AGLQFPVGR+ R LK +     RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K +
Sbjct:   28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13
Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513
            SRS +AG+QFPVGRI R LK+   +  RVG  A                   GNA++D K  RI PRH+ LA+R DEEL  L+ G TIA GGV+P+I+  L+ K
Sbjct:   30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13
Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            S+S K GL FPVGR+G  +++G+Y++R+G +GA                     AA+  KK  R+ PR V+LA R+D+++G LL  VT++H GV+P+++  +  KK
Sbjct:   16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13
Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  208 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            RS KA LQF V R+   LKKGRY +R+G  AP                   N    +K+  I PRH++LAVRND E+ KL  GVTI+  GV+P     L  +K
Sbjct:   18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13
Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            ++S +AGLQFPVGRI R+LK    +  R+G  A                   GNA++D +  RI PRH+ LA+R DEEL  ++   TIA GGVLP+I+  L+   S
Sbjct:   25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12
Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 486
            SRS +AG+ FPV R+ R L++GR++ RV + AP                   N    +KK RI P+H+  AV ND EL  L   VTIA+GGVLP
Sbjct:   36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL--PKK 516
            SRS +A L FPV RI + +++GR+++R  + AP                     A    K RI P+H+ L++  D EL  LL  VTIA+GGV   I+P+LL  PKK
Sbjct:  132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237          
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2AZL_XENLA1.916e-1346.67Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE... [more]
H2AV3_ARATH1.916e-1344.34Probable histone H2A variant 3 OS=Arabidopsis thal... [more]
H2AV2_ARATH1.916e-1346.15Probable histone H2A variant 2 OS=Arabidopsis thal... [more]
H2A2_LEIIN4.269e-1337.74Histone H2A.2 OS=Leishmania infantum PE=2 SV=1[more]
H2A2_LILLO7.282e-1341.75Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 S... [more]
H2AZ_USTMA9.511e-1341.51Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1[more]
H2AX_DICDI1.622e-1242.55Histone H2A.x OS=Dictyostelium discoideum GN=H2AX ... [more]
H2AV1_DICDI3.059e-1138.68Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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