CN188114
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZL_XENLA (Histone H2A.Z-like OS=Xenopus laevis GN=h2a.zl1 PE=2 SV=3) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 49/105 (46.67%), Postives = 60/105 (57.14%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 +RS +AGLQFPVGRI R LK S RVG A GNA++D K RI PRH+ LA+R DEEL L+ TIA GGV+P+I+ L+ KK Sbjct: 19 TRSSRAGLQFPVGRIHRLLKNRTTSHGRVGGTAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDALIK-ATIAGGGVIPHIHKSLIGKK 122
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV3_ARATH (Probable histone H2A variant 3 OS=Arabidopsis thaliana GN=At1g52740 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 47/106 (44.34%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLK-KGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 +RS +AGLQFPVGR+ R LK + RVG A GNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K + Sbjct: 28 TRSSRAGLQFPVGRVHRLLKTRSTAHGRVGATAAVYTAAILEYLTAEVLELAGNASKDLKVKRISPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLINKSA 132
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV2_ARATH (Probable histone H2A variant 2 OS=Arabidopsis thaliana GN=At2g38810 PE=1 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 1.916e-13 Identity = 48/104 (46.15%), Postives = 61/104 (58.65%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPK 513 SRS +AG+QFPVGRI R LK+ + RVG A GNA++D K RI PRH+ LA+R DEEL L+ G TIA GGV+P+I+ L+ K Sbjct: 30 SRSSRAGIQFPVGRIHRQLKQRVSAHGRVGATAAVYTASILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDTLIKG-TIAGGGVIPHIHKSLVNK 132
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_LEIIN (Histone H2A.2 OS=Leishmania infantum PE=2 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.269e-13 Identity = 40/106 (37.74%), Postives = 64/106 (60.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVG-TGAPXXXXXXXXXXXXXXXXXXGNAARDNKKN-RIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 S+S K GL FPVGR+G +++G+Y++R+G +GA AA+ KK R+ PR V+LA R+D+++G LL VT++H GV+P+++ + KK Sbjct: 16 SKSAKCGLIFPVGRVGGMMRRGQYARRIGASGAVYLAAVLEYLTAELLELSVKAAAQSGKKRCRLNPRTVMLAARHDDDIGTLLKNVTLSHSGVVPSVSKAVAKKK 121
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_LILLO (Histone H2A.2 OS=Lilium longiflorum GN=gH2A PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 7.282e-13 Identity = 43/103 (41.75%), Postives = 54/103 (52.43%), Query Frame = 1 Query: 208 RSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 RS KA LQF V R+ LKKGRY +R+G AP N +K+ I PRH++LAVRND E+ KL GVTI+ GV+P L +K Sbjct: 18 RSEKAALQFSVSRVEYSLKKGRYCRRLGATAPVYLAAVLENLVAEVLEMAANVTEKHKRIVIKPRHIMLAVRNDVEVNKLFHGVTISASGVVPKTRKELDRRK 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AZ_USTMA (Histone H2A.Z OS=Ustilago maydis GN=HTZ1 PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 9.511e-13 Identity = 44/106 (41.51%), Postives = 60/106 (56.60%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQ-RVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 ++S +AGLQFPVGRI R+LK + R+G A GNA++D + RI PRH+ LA+R DEEL ++ TIA GGVLP+I+ L+ S Sbjct: 25 TQSARAGLQFPVGRIHRHLKSRTQNHVRIGAKAAVYTSAILEYLTAEVLELAGNASKDMRLKRITPRHLQLAIRGDEELDSMVR-ATIAGGGVLPHIHKTLIKAPS 129
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_DICDI (Histone H2A.x OS=Dictyostelium discoideum GN=H2AX PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.622e-12 Identity = 40/94 (42.55%), Postives = 52/94 (55.32%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLP 486 SRS +AG+ FPV R+ R L++GR++ RV + AP N +KK RI P+H+ AV ND EL L VTIA+GGVLP Sbjct: 36 SRSARAGITFPVSRVDRLLREGRFAPRVESTAPVYLAAVLEYLVFEILELAHNTCSISKKTRITPQHINWAVGNDLELNSLFQHVTIAYGGVLP 129
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AV1_DICDI (Histone H2A.v1 OS=Dictyostelium discoideum GN=H2Av1 PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 3.059e-11 Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLL--PKK 516 SRS +A L FPV RI + +++GR+++R + AP A K RI P+H+ L++ D EL LL VTIA+GGV I+P+LL PKK Sbjct: 132 SRSARADLTFPVSRIEKMIREGRFTKRCSSDAPVFLAAVLEYLTLEILELSITYANQKNKTRITPQHIHLSICCDAELNDLLKNVTIANGGVPKFIHPILLDTPKK 237 The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bpback to top |