CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32
Identity = 71/105 (67.62%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            S S KAGLQFPVGRIGRYLKKG+Y++RVG GAP                  GNAARDNKK+RI PRH+ LAVRNDEEL K LAGVT A GGVLPNI+ VLLPKKS
Sbjct:   17 SNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32
Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS KAGLQFPVGRI R+LK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL KLL  VTIA+GGVLPNI+ VLLPKKS
Sbjct:   20 SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2)

HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31
Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R+L+KG Y+QRVG GAP                  GNAARDNKK RIIPRH+ LAVRNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   17 SRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 70/105 (66.67%), Postives = 77/105 (73.33%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 120          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGLQFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31
Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGLQFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI  VLLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGLQFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516
            SRS KAGLQFPVGRI RYLK G+Y++RVG GAP                  GNAARDNKKNRI+PRH+ LAVRNDEEL +LL  VTIA GGVLPNI+  LLPKK
Sbjct:   20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30
Identity = 69/105 (65.71%), Postives = 75/105 (71.43%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R+LKKG Y  RVG GAP                  GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120          
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2)

HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++R+G GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKKS
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120          
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A_PLAFA4.106e-3267.62Histone H2A OS=Plasmodium falciparum PE=2 SV=1[more]
H2AX_PICAB7.004e-3266.67Histone H2AX OS=Picea abies PE=2 SV=1[more]
H2AL_STRPU2.662e-3165.71Late histone H2A.L3 OS=Strongylocentrotus purpurat... [more]
H2A_ACRFO7.744e-3166.67Histone H2A OS=Acropora formosa PE=3 SV=2[more]
H2AXA_ORYSJ7.744e-3166.35Probable histone H2AXa OS=Oryza sativa subsp. japo... [more]
H2AXA_ORYSI7.744e-3166.35Probable histone H2AXa OS=Oryza sativa subsp. indi... [more]
H2AXB_ORYSJ1.011e-3065.38Probable histone H2AXb OS=Oryza sativa subsp. japo... [more]
H2AXB_ORYSI1.011e-3065.38Probable histone H2AXb OS=Oryza sativa subsp. indi... [more]
H2A2_PSAMI1.011e-3065.71Late histone H2A.2.1 OS=Psammechinus miliaris PE=2... [more]
H2A_URECA1.725e-3064.76Histone H2A OS=Urechis caupo PE=3 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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