CN188114
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_PLAFA (Histone H2A OS=Plasmodium falciparum PE=2 SV=1) HSP 1 Score: 138.272 bits (347), Expect = 4.106e-32 Identity = 71/105 (67.62%), Postives = 77/105 (73.33%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 S S KAGLQFPVGRIGRYLKKG+Y++RVG GAP GNAARDNKK+RI PRH+ LAVRNDEEL K LAGVT A GGVLPNI+ VLLPKKS Sbjct: 17 SNSAKAGLQFPVGRIGRYLKKGKYAKRVGAGAPVYLAAVLEYLCAEILELAGNAARDNKKSRITPRHIQLAVRNDEELNKFLAGVTFASGGVLPNIHNVLLPKKS 121
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AX_PICAB (Histone H2AX OS=Picea abies PE=2 SV=1) HSP 1 Score: 137.502 bits (345), Expect = 7.004e-32 Identity = 70/105 (66.67%), Postives = 78/105 (74.29%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS KAGLQFPVGRI R+LK G+Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL KLL VTIA+GGVLPNI+ VLLPKKS Sbjct: 20 SRSQKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSKLLGAVTIANGGVLPNIHQVLLPKKS 124
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AL_STRPU (Late histone H2A.L3 OS=Strongylocentrotus purpuratus PE=1 SV=2) HSP 1 Score: 135.576 bits (340), Expect = 2.662e-31 Identity = 69/105 (65.71%), Postives = 77/105 (73.33%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGR+ R+L+KG Y+QRVG GAP GNAARDNKK RIIPRH+ LAVRNDEEL KLL+GVTIA GGVLPNI VLLPKK+ Sbjct: 17 SRSARAGLQFPVGRVHRFLRKGNYAQRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 121
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_ACRFO (Histone H2A OS=Acropora formosa PE=3 SV=2) HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31 Identity = 70/105 (66.67%), Postives = 77/105 (73.33%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++RVG GAP GNAARDNKK+RIIPRH+ LAVRNDEEL KLLAGVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYMAAVLEYLSAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSJ (Probable histone H2AXa OS=Oryza sativa subsp. japonica GN=Os03g0721900 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31 Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 SRS KAGLQFPVGRI RYLK G+Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXA_ORYSI (Probable histone H2AXa OS=Oryza sativa subsp. indica GN=OsI_012923 PE=3 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 7.744e-31 Identity = 69/104 (66.35%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 SRS KAGLQFPVGRI RYLK G+Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI VLLPKK Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGTVTIAAGGVLPNIQQVLLPKK 123
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSJ (Probable histone H2AXb OS=Oryza sativa subsp. japonica GN=Os12g0530000 PE=2 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 SRS KAGLQFPVGRI RYLK G+Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI+ LLPKK Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2AXB_ORYSI (Probable histone H2AXb OS=Oryza sativa subsp. indica GN=OsI_037312 PE=3 SV=1) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 68/104 (65.38%), Postives = 75/104 (72.12%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKK 516 SRS KAGLQFPVGRI RYLK G+Y++RVG GAP GNAARDNKKNRI+PRH+ LAVRNDEEL +LL VTIA GGVLPNI+ LLPKK Sbjct: 20 SRSSKAGLQFPVGRIARYLKAGKYAERVGAGAPVYLSAVLEYLAAEVLELAGNAARDNKKNRIVPRHIQLAVRNDEELSRLLGAVTIAAGGVLPNIHQTLLPKK 123
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A2_PSAMI (Late histone H2A.2.1 OS=Psammechinus miliaris PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 1.011e-30 Identity = 69/105 (65.71%), Postives = 75/105 (71.43%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGR+ R+LKKG Y RVG GAP GNAARDNKK+RIIPRH+ LAVRNDEEL KLL GVTIA GGVLPNI VLLPKK+ Sbjct: 16 SRSSRAGLQFPVGRVHRFLKKGNYGNRVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKSRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQTVLLPKKT 120
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_URECA (Histone H2A OS=Urechis caupo PE=3 SV=2) HSP 1 Score: 132.88 bits (333), Expect = 1.725e-30 Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 Query: 205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519 SRS +AGLQFPVGRI R L+KG Y++R+G GAP GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI VLLPKKS Sbjct: 16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKS 120 The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 238
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Sequences
The
following sequences are available for this feature:
EST sequence >CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bpback to top |