CN188114

Overview
NameCN188114
Unique NameCN188114
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A1_ARATH (Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.253e-30
Identity = 66/105 (62.86%), Postives = 78/105 (74.29%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            +RS KAGLQFPVGRI R+LKKG+Y++RVG GAP                  GNAARDNKK RI+PRH+ LAVRNDEEL KLL  VTIA+GGV+PNI+ +LLPKK+
Sbjct:   18 TRSSKAGLQFPVGRIARFLKKGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKT 122
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_PARAN (Histone H2A, gonadal OS=Parechinus angulosus PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R+L+KG Y+ RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_CAEEL (Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 69/105 (65.71%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R L+KG Y+QRVG GAP                  GNAARDNKK RI PRH+ LAVRNDEEL KLLAGVTIA GGVLPNI  VLLPKK+
Sbjct:   18 SRSSRAGLQFPVGRLHRILRKGNYAQRVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIAPRHLQLAVRNDEELNKLLAGVTIAQGGVLPNIQAVLLPKKT 122
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A3_PSAMI (Late histone H2A.3, gonadal OS=Psammechinus miliaris PE=1 SV=2)

HSP 1 Score: 132.109 bits (331), Expect = 2.943e-30
Identity = 67/105 (63.81%), Postives = 75/105 (71.43%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGR+ R+L+KG Y+ RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRVHRFLRKGNYANRVGAGAPVYLAAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_TIGCA (Histone H2A OS=Tigriopus californicus GN=His2A PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_SIPNU (Histone H2A OS=Sipunculus nudus PE=1 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++R+G GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_RHYAM (Histone H2A OS=Rhynchosciara americana GN=His2A PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_LITVA (Histone H2A OS=Litopenaeus vannamei PE=1 SV=3)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 67/105 (63.81%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RI+PRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSSRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIVPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_DROYA (Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
[Close]
BLAST of CN188114 vs. ExPASy Swiss-Prot
Match: H2A_DROSI (Histone H2A OS=Drosophila simulans GN=His2A PE=3 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 3.843e-30
Identity = 68/105 (64.76%), Postives = 76/105 (72.38%), Query Frame = 1 
Query:  205 SRSVKAGLQFPVGRIGRYLKKGRYSQRVGTGAPXXXXXXXXXXXXXXXXXXGNAARDNKKNRIIPRHVLLAVRNDEELGKLLAGVTIAHGGVLPNINPVLLPKKS 519
            SRS +AGLQFPVGRI R L+KG Y++RVG GAP                  GNAARDNKK RIIPRH+ LA+RNDEEL KLL+GVTIA GGVLPNI  VLLPKK+
Sbjct:   16 SRSNRAGLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLSGVTIAQGGVLPNIQAVLLPKKT 120
The following BLAST results are available for this feature:
BLAST of CN188114 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 238
Match NameE-valueIdentityDescription
H2A1_ARATH2.253e-3062.86Probable histone H2A.1 OS=Arabidopsis thaliana GN=... [more]
H2A_PARAN2.943e-3063.81Histone H2A, gonadal OS=Parechinus angulosus PE=1 ... [more]
H2A_CAEEL2.943e-3065.71Histone H2A OS=Caenorhabditis elegans GN=his-3 PE=... [more]
H2A3_PSAMI2.943e-3063.81Late histone H2A.3, gonadal OS=Psammechinus miliar... [more]
H2A_TIGCA3.843e-3064.76Histone H2A OS=Tigriopus californicus GN=His2A PE=... [more]
H2A_SIPNU3.843e-3063.81Histone H2A OS=Sipunculus nudus PE=1 SV=2[more]
H2A_RHYAM3.843e-3064.76Histone H2A OS=Rhynchosciara americana GN=His2A PE... [more]
H2A_LITVA3.843e-3063.81Histone H2A OS=Litopenaeus vannamei PE=1 SV=3[more]
H2A_DROYA3.843e-3064.76Histone H2A OS=Drosophila yakuba GN=His2A PE=2 SV=... [more]
H2A_DROSI3.843e-3064.76Histone H2A OS=Drosophila simulans GN=His2A PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005I08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005I08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188114 ID=CN188114; Name=CN188114; organism=Citrus sinensis; type=EST; length=723bp
GAGGCACCAACGCCTCACATTGCGGTCACACAGTCACACTACATTTCTTT
TAGTTTCCGTTTGTTTCTCGAGAAAATTTTGTTTTTGCCATTTTTTTCTT
CCCCCTAACTTCTTCTTGACTTTGCTGGTGTGATGGAGAGTGGAGGAAAG
GTGAAGAGAGGAGCAGGAGGAAGGAAAGGGGGTGGTCCAAAGAAGAAACC
GGTCTCCCGGTCGGTGAAAGCCGGTCTGCAGTTCCCGGTCGGTCGGATCG
GTCGCTATCTGAAGAAGGGACGCTACTCTCAGCGTGTGGGAACCGGCGCT
CCGGTCTATCTTGCTGCTGTACTTGAGTACCTCGCAGCTGAGGTTCTTGA
GTTGGCTGGTAATGCAGCGAGGGACAACAAGAAGAATAGGATCATCCCAA
GGCATGTTCTGTTGGCTGTAAGAAATGATGAGGAGCTTGGGAAGCTTCTT
GCTGGTGTGACAATTGCTCACGGTGGAGTCTTGCCAAACATCAACCCAGT
TCTTCTGCCGAAAAAATCTGAGAAGGCAGCAACGAAAGAGCCGAAGTCTC
CAGCCAAGGCCACTAAGTCCCCAAAGAAGGCTTAGTTTTTAGTCTTCTCA
TCTTTAACTGTGTGTATGTTACTTCTTTGATGTATTCGGCTTGTAGGAAA
GCTTCATGCTCGTAGGATTTAGGGACCATTCTACTGTTTTTAATTGTCCG
TCACTGTGTAAAACTTCTTTTGC
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